Variant report

Variant	rs531107596
Chromosome Location	chr15:75203499-75203500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75202153-75203506	K562	blood:	n/a	n/a
2	POLR2A	chr15:75202002-75203506	SK-N-MC	brain:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:120729160..120731044-chr15:75203299..75205954,2	MCF-7	breast:
2	chr15:75198819..75200407-chr15:75202109..75204144,2	MCF-7	breast:
3	chr15:75202900..75206033-chr15:75227299..75230499,5	K562	blood:
4	chr15:75135584..75137401-chr15:75203123..75205783,2	K562	blood:
5	chr15:75196237..75205947-chr15:75227299..75233104,18	K562	blood:
6	chr15:75202516..75204204-chr15:75228807..75231774,3	MCF-7	breast:
7	chr15:75197065..75200816-chr15:75202380..75207504,10	K562	blood:

No data

Variant related genes	Relation type
FAM219B	TF binding region
ENSG00000200795	Chromatin interaction
ENSG00000178741	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000178761	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv3312325	chr15:75203053-75210647	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	esv3312326	chr15:75203067-75210644	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75199600-75229400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:75199800-75204000	Weak transcription	Lung	lung
3	chr15:75199800-75209400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:75199800-75219600	Weak transcription	Aorta	Aorta
5	chr15:75200000-75203800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:75200000-75203800	Weak transcription	Osteobl	bone
7	chr15:75200000-75204000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:75200000-75204000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:75200000-75204000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:75200000-75204000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:75200000-75204000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:75200000-75204000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:75200000-75204000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:75200000-75204000	Weak transcription	NHLF	lung
15	chr15:75200000-75204200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:75200000-75205400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:75200000-75205400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:75200000-75205400	Weak transcription	HSMMtube	muscle
19	chr15:75200000-75205600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:75200000-75205600	Weak transcription	Primary B cells from cord blood	blood
21	chr15:75200000-75206400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr15:75200000-75207000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:75200000-75207000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:75200000-75207000	Weak transcription	Esophagus	oesophagus
25	chr15:75200000-75207200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:75200000-75207200	Weak transcription	Gastric	stomach
27	chr15:75200000-75209600	Weak transcription	Psoas Muscle	Psoas
28	chr15:75200000-75209800	Weak transcription	Ovary	ovary
29	chr15:75200000-75209800	Weak transcription	Small Intestine	intestine
30	chr15:75200000-75211000	Weak transcription	Fetal Kidney	kidney
31	chr15:75200000-75211600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:75200000-75221000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:75200000-75224000	Weak transcription	Stomach Mucosa	stomach
34	chr15:75200200-75203800	Weak transcription	Adipose Nuclei	Adipose
35	chr15:75200200-75203800	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:75200200-75203800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr15:75200200-75203800	Weak transcription	Fetal Intestine Large	intestine
38	chr15:75200200-75203800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:75200200-75203800	Weak transcription	Hela-S3	cervix
40	chr15:75200200-75204000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:75200200-75204000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:75200200-75204000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:75200200-75204000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:75200200-75204000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr15:75200200-75204000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:75200200-75204000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:75200200-75204000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr15:75200200-75204000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:75200200-75204000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:75200200-75204000	Weak transcription	Brain Germinal Matrix	brain

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