Variant report

Variant	rs531156186
Chromosome Location	chr15:73977239-73977240
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:39)
CpG islands
(count:61)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:39 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr15:73977200-73977345	H1-hESC	embryonic stem cell:	n/a	n/a
2	MXI1	chr15:73977119-73977744	Hela-S3	cervix:	n/a	n/a
3	ELF1	chr15:73976885-73977264	K562	blood:	n/a	n/a
4	REST	chr15:73975721-73978190	H1-neurons	neurons:	n/a	chr15:73976590-73976603 chr15:73977028-73977041 chr15:73976851-73976864 chr15:73976907-73976920 chr15:73976087-73976096
5	ZBTB7A	chr15:73977201-73977318	K562	blood:	n/a	n/a
6	POLR2A	chr15:73976244-73977474	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr15:73975950-73977872	H1-neurons	neurons:	n/a	n/a
8	ZBTB7A	chr15:73976759-73977807	ECC-1	luminal epithelium:	n/a	n/a
9	POLR2A	chr15:73976051-73977459	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr15:73977173-73977488	MCF-7	breast:	n/a	n/a
11	POLR2A	chr15:73976106-73979724	IMR90	lung:	n/a	n/a
12	CHD2	chr15:73975942-73977765	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr15:73977057-73977448	Hela-S3	cervix:	n/a	n/a
14	ELF1	chr15:73976889-73977311	HepG2	liver:	n/a	n/a
15	ELF1	chr15:73976944-73977268	HepG2	liver:	n/a	n/a
16	POLR2A	chr15:73975912-73977770	H1-neurons	neurons:	n/a	n/a
17	NR2F2	chr15:73976972-73977802	MCF-7	breast:	n/a	n/a
18	MXI1	chr15:73975959-73977393	HepG2	liver:	n/a	n/a
19	MYC	chr15:73977212-73977516	MCF-7	breast:	n/a	n/a
20	POLR2A	chr15:73976000-73977338	HepG2	liver:	n/a	n/a
21	SMARCB1	chr15:73975754-73977778	Hela-S3	cervix:	n/a	chr15:73977729-73977738
22	POLR2A	chr15:73976533-73977427	HepG2	liver:	n/a	n/a
23	SIN3A	chr15:73975988-73977643	H1-hESC	embryonic stem cell:	n/a	chr15:73976907-73976920 chr15:73976590-73976603
24	MAX	chr15:73975966-73977772	Hela-S3	cervix:	n/a	n/a
25	MAZ	chr15:73975997-73977509	HepG2	liver:	n/a	n/a
26	POLR2A	chr15:73975986-73977396	HepG2	liver:	n/a	n/a
27	TAF1	chr15:73976688-73977720	H1-neurons	neurons:	n/a	n/a
28	MAZ	chr15:73975756-73978490	IMR90	lung:	n/a	n/a
29	ELF1	chr15:73976766-73977408	GM12878	blood:	n/a	n/a
30	SIN3AK20	chr15:73977049-73977476	PFSK-1	brain:	n/a	n/a
31	ZBTB7A	chr15:73976480-73977732	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr15:73976083-73977647	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTBP2	chr15:73975901-73977620	H1-hESC	embryonic stem cell:	n/a	n/a
34	ELF1	chr15:73976892-73977442	MCF-7	breast:	n/a	n/a
35	POLR2A	chr15:73977138-73977383	H1-hESC	embryonic stem cell:	n/a	n/a
36	MAZ	chr15:73975746-73977600	Hela-S3	cervix:	n/a	n/a
37	E2F6	chr15:73976957-73977690	H1-hESC	embryonic stem cell:	n/a	chr15:73977159-73977169 chr15:73977061-73977070
38	POLR2A	chr15:73975996-73977652	MCF-7	breast:	n/a	n/a
39	SIN3AK20	chr15:73975520-73978073	MCF-7	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:73977201-73977251	NHDF-neo	bronchial:	n/a
2	chr15:73977201-73977251	Hela-S3	cervix:	n/a
3	chr15:73977201-73977251	GM12892	blood:	n/a
4	chr15:73977201-73977251	HCPEpiC	choroid plexus:	n/a
5	chr15:73977201-73977251	LNCaP	prostate:	n/a
6	chr15:73977201-73977251	HCT-116	colon:	n/a
7	chr15:73977201-73977251	SK-N-SH	brain:	n/a
8	chr15:73977201-73977251	Caco-2	colon:	n/a
9	chr15:73977201-73977251	HPAEpiC	pulmonary alveolar:	n/a
10	chr15:73977201-73977251	HCF	heart:	n/a
11	chr15:73977201-73977251	NH-A	brain:	n/a
12	chr15:73977201-73977251	AG09309	skin:	n/a
13	chr15:73977201-73977251	HMEC	breast:	n/a
14	chr15:73977201-73977251	AG10803	skin:	n/a
15	chr15:73977201-73977251	T-47D	breast:	n/a
16	chr15:73977201-73977251	HRPEpiC	eye:	n/a
17	chr15:73977201-73977251	SKMC	muscle:	n/a
18	chr15:73977201-73977251	HL-60	blood:	n/a
19	chr15:73977201-73977251	HepG2	liver:	n/a
20	chr15:73977201-73977251	HAEpiC	amniotic membrane:	n/a
21	chr15:73977201-73977251	HIPEpiC	eye:	n/a
22	chr15:73977201-73977251	GM12891	blood:	n/a
23	chr15:73977201-73977251	HCM	heart:	n/a
24	chr15:73977201-73977251	SK-N-SH_RA	brain:	n/a
25	chr15:73977201-73977251	PFSK-1	brain:	n/a
26	chr15:73977201-73977251	A549	lung:	n/a
27	chr15:73977201-73977251	AoSMC	blood vessel:	n/a
28	chr15:73977201-73977251	MCF-7	breast:	n/a
29	chr15:73977201-73977251	SK-N-MC	brain:	n/a
30	chr15:73977201-73977251	HEEpiC	esophagus:	n/a
31	chr15:73977201-73977251	BJ	skin:	n/a
32	chr15:73977201-73977251	BE2_C	brain:	n/a
33	chr15:73977201-73977251	HRE	kidney:	n/a
34	chr15:73977201-73977251	SAEC	small airway:	n/a
35	chr15:73977201-73977251	PrEC	prostate:	n/a
36	chr15:73977201-73977251	Hepatocyte	liver:	n/a
37	chr15:73977201-73977251	GM06990	blood:	n/a
38	chr15:73977201-73977251	ovcar-3	ovarian:	n/a
39	chr15:73977201-73977251	CMK	blood:	n/a
40	chr15:73977201-73977251	HNPCEpiC	eye:	n/a
41	chr15:73977201-73977251	H1-hESC	embryonic stem cell:	embryo
42	chr15:73977201-73977251	NHBE	bronchial:	n/a
43	chr15:73977201-73977251	K562	blood:	n/a
44	chr15:73977201-73977251	AG04449	skin:	fetal
45	chr15:73977201-73977251	AG09319	gingival:	n/a
46	chr15:73977201-73977251	U87	brain:	n/a
47	chr15:73977201-73977251	HRCEpiC	kidney:	n/a
48	chr15:73977201-73977251	MCF10A-Er-Src	breast:	n/a
49	chr15:73977201-73977251	ECC-1	luminal epithelium:	n/a
50	chr15:73977201-73977251	PANC-1	pancreas:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:73923335..73928580-chr15:73974636..73980559,10	MCF-7	breast:
2	chr15:73976707..73977570-chr17:73266758..73267281,2	HCT-116	colon:
3	chr15:73975489..73977527-chr15:73994222..73997098,2	MCF-7	breast:
4	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
5	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:
6	chr15:73976691..73979215-chr15:74216849..74218653,2	MCF-7	breast:

No data

Variant related genes	Relation type
CD276	TF binding region
CD276	CpG island
ENSG00000261801	Chromatin interaction
ENSG00000129038	Chromatin interaction
ENSG00000156642	Chromatin interaction
ENSG00000125457	Chromatin interaction
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3434440	chr15:73975149-73978997	Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3341618	chr15:73975424-73978272	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73975800-73978000	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr15:73975800-73978000	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr15:73975800-73978200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr15:73975800-73978200	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr15:73976000-73977600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:73976000-73977800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:73976000-73977800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr15:73976000-73977800	Active TSS	Fetal Kidney	kidney
9	chr15:73976000-73978000	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr15:73976000-73978000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr15:73976000-73978200	Active TSS	H9 Cell Line	embryonic stem cell
12	chr15:73976000-73978200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:73976000-73978400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:73976000-73978600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:73976200-73977800	Active TSS	Gastric	stomach
16	chr15:73976200-73978000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:73976200-73978000	Active TSS	Brain Angular Gyrus	brain
18	chr15:73976200-73978000	Active TSS	Brain Germinal Matrix	brain
19	chr15:73976200-73978000	Active TSS	Brain Hippocampus Middle	brain
20	chr15:73976200-73978000	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr15:73976200-73978000	Active TSS	HSMMtube	muscle
22	chr15:73976200-73978200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:73976200-73978200	Active TSS	Aorta	Aorta
24	chr15:73976400-73977400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:73976400-73977400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:73976400-73977400	Weak transcription	Fetal Heart	heart
27	chr15:73976400-73977400	Active TSS	Fetal Intestine Small	intestine
28	chr15:73976400-73977400	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr15:73976400-73977600	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr15:73976400-73977600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:73976400-73977600	Active TSS	Liver	Liver
32	chr15:73976400-73977600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
33	chr15:73976400-73977600	Active TSS	Fetal Lung	lung
34	chr15:73976400-73977600	Active TSS	Fetal Stomach	stomach
35	chr15:73976400-73977600	Active TSS	Ovary	ovary
36	chr15:73976400-73977600	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr15:73976400-73977600	Active TSS	Rectal Smooth Muscle	rectum
38	chr15:73976400-73977600	Bivalent/Poised TSS	Thymus	Thymus
39	chr15:73976400-73977600	Active TSS	Hela-S3	cervix
40	chr15:73976400-73977800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:73976400-73977800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:73976400-73977800	Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr15:73976400-73977800	Active TSS	Colon Smooth Muscle	Colon
44	chr15:73976400-73977800	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr15:73976400-73977800	Active TSS	HepG2	liver
46	chr15:73976400-73978000	Active TSS	H1 Cell Line	embryonic stem cell
47	chr15:73976400-73978000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:73976400-73978000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:73976400-73978000	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr15:73976400-73978000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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