Variant report

Variant	rs531195388
Chromosome Location	chr16:65073031-65073032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1831	chr16:65071976-65106105	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr16:65040600-65086000	Weak transcription	HMEC	breast
4	chr16:65046400-65075600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr16:65047200-65078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr16:65058600-65104400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr16:65059800-65078400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr16:65062400-65074800	Weak transcription	Aorta	Aorta
9	chr16:65065800-65074800	Weak transcription	NHDF-Ad	bronchial
10	chr16:65066200-65074800	Weak transcription	HSMM	muscle
11	chr16:65066800-65076800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr16:65066800-65078400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr16:65069200-65075200	Weak transcription	HSMMtube	muscle
14	chr16:65069800-65105000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr16:65070600-65075000	Weak transcription	Ovary	ovary
16	chr16:65071400-65075000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr16:65071800-65073200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr16:65071800-65077400	Weak transcription	NHLF	lung
19	chr16:65072000-65074400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr16:65072200-65073200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr16:65072200-65074800	Weak transcription	NH-A	brain
22	chr16:65072400-65074800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr16:65072600-65075200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr16:65072600-65075800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr16:65072600-65076200	Weak transcription	Brain Angular Gyrus	brain
26	chr16:65072600-65077800	Weak transcription	Brain Germinal Matrix	brain
27	chr16:65072800-65073200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr16:65072800-65073200	ZNF genes & repeats	Fetal Muscle Leg	muscle
29	chr16:65072800-65073400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr16:65072800-65075000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr16:65072800-65075000	Weak transcription	Brain Anterior Caudate	brain
32	chr16:65072800-65075000	Weak transcription	Fetal Kidney	kidney
33	chr16:65072800-65075000	Weak transcription	Fetal Stomach	stomach
34	chr16:65072800-65076000	Weak transcription	Brain Hippocampus Middle	brain
35	chr16:65072800-65076400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr16:65072800-65076600	Weak transcription	Brain Substantia Nigra	brain
37	chr16:65072800-65077200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr16:65072800-65078000	Weak transcription	Fetal Brain Female	brain
39	chr16:65072800-65078400	Weak transcription	Fetal Brain Male	brain
40	chr16:65072800-65088800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr16:65072800-65096200	Weak transcription	Colon Smooth Muscle	Colon
42	chr16:65073000-65073600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr16:65073000-65074400	Weak transcription	Fetal Lung	lung
44	chr16:65073000-65074600	Weak transcription	Osteobl	bone
45	chr16:65073000-65075000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr16:65073000-65075200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr16:65073000-65076200	Weak transcription	Spleen	Spleen
48	chr16:65073000-65076400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr16:65073000-65078600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links