Variant report

Variant	rs531214584
Chromosome Location	chr9:2199201-2199202
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016148	chr9:1457605-2361750	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv539916	chr9:1457605-2361750	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1021712	chr9:1647840-2216839	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv539921	chr9:1647840-2216839	Bivalent Enhancer Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1020530	chr9:1870197-2658587	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1022063	chr9:2094860-2215240	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv539926	chr9:2094860-2215240	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv892056	chr9:2124140-2227217	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv892057	chr9:2144687-2241994	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	nsv892059	chr9:2198627-2255397	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2173200-2201800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:2179400-2202800	Weak transcription	Psoas Muscle	Psoas
3	chr9:2181600-2199400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr9:2188000-2201600	Weak transcription	Small Intestine	intestine
5	chr9:2188400-2202400	Strong transcription	Primary T cells from cord blood	blood
6	chr9:2191600-2213800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:2191600-2221200	Weak transcription	Gastric	stomach
8	chr9:2192200-2199800	Weak transcription	Colonic Mucosa	Colon
9	chr9:2192200-2200000	Weak transcription	Fetal Intestine Small	intestine
10	chr9:2192200-2200000	Weak transcription	Pancreas	Pancrea
11	chr9:2192200-2200200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:2192800-2202400	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:2193200-2200400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:2193200-2200400	Weak transcription	Fetal Lung	lung
15	chr9:2193200-2208600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:2194000-2202200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:2194200-2203000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:2194200-2203200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:2195200-2199400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr9:2195200-2199400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:2195800-2201800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:2196000-2199800	Weak transcription	Placenta	Placenta
23	chr9:2196000-2200000	Weak transcription	Lung	lung
24	chr9:2196000-2200200	Weak transcription	Spleen	Spleen
25	chr9:2196000-2200400	Weak transcription	Ovary	ovary
26	chr9:2196000-2200400	Weak transcription	Right Ventricle	heart
27	chr9:2196000-2203200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:2196200-2200400	Weak transcription	Esophagus	oesophagus
29	chr9:2196200-2200600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:2196200-2200600	Weak transcription	Dnd41	blood
31	chr9:2196400-2199400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:2196400-2199400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr9:2196400-2199800	Weak transcription	Fetal Muscle Leg	muscle
34	chr9:2196400-2200000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:2196400-2200000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr9:2196400-2200000	Weak transcription	Aorta	Aorta
37	chr9:2196400-2200000	Weak transcription	Fetal Stomach	stomach
38	chr9:2196400-2200200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr9:2196400-2203200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr9:2196400-2214000	Weak transcription	Left Ventricle	heart
41	chr9:2196600-2199600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr9:2196600-2199800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr9:2196600-2200600	Weak transcription	Fetal Intestine Large	intestine
44	chr9:2196600-2200600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:2197200-2201600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:2197400-2200200	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr9:2197400-2204000	Weak transcription	Liver	Liver
48	chr9:2197600-2199400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr9:2197800-2200200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr9:2198200-2200000	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links