Variant report

Variant	rs531239646
Chromosome Location	chr7:65933171-65933172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv482441	chr7:65885824-66061788	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	esv1802195	chr7:65886451-65945211	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1027068	chr7:65901543-65991211	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	esv3447484	chr7:65909457-66033145	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv966834	chr7:65932080-65939344	Strong transcription Enhancers Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65879200-65939800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:65879200-65946000	Weak transcription	NHEK	skin
3	chr7:65879200-65957600	Weak transcription	Psoas Muscle	Psoas
4	chr7:65889200-65939600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:65891600-65939000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:65894200-65939200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:65898200-65938200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:65904400-65939000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:65905600-65938600	Weak transcription	Pancreas	Pancrea
10	chr7:65905600-65957600	Weak transcription	Fetal Lung	lung
11	chr7:65906000-65940200	Weak transcription	Fetal Intestine Large	intestine
12	chr7:65906200-65938600	Weak transcription	Lung	lung
13	chr7:65910000-65938400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:65910200-65940000	Weak transcription	Placenta	Placenta
15	chr7:65911400-65957800	Weak transcription	Aorta	Aorta
16	chr7:65911800-65938600	Weak transcription	Fetal Intestine Small	intestine
17	chr7:65912000-65944000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:65912600-65939000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:65913000-65946800	Weak transcription	Esophagus	oesophagus
20	chr7:65914000-65939200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr7:65914200-65939000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:65914400-65938200	Weak transcription	Primary T cells from cord blood	blood
23	chr7:65914600-65938600	Weak transcription	Fetal Stomach	stomach
24	chr7:65914600-65938800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:65915200-65939000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:65915800-65954200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:65917000-65957800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:65917200-65938400	Weak transcription	Thymus	Thymus
29	chr7:65917600-65938600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr7:65917800-65939600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:65918600-65938200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:65920600-65939600	Weak transcription	GM12878-XiMat	blood
33	chr7:65924800-65939000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:65925000-65939000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:65925000-65940400	Weak transcription	Brain Angular Gyrus	brain
36	chr7:65925000-65948400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:65925000-65957200	Weak transcription	Dnd41	blood
38	chr7:65925000-65957600	Weak transcription	Left Ventricle	heart
39	chr7:65925400-65939000	Weak transcription	Brain Anterior Caudate	brain
40	chr7:65925400-65939200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:65925400-65955400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:65925400-65957200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr7:65925600-65938600	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:65926800-65940000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:65927200-65939000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr7:65927600-65950000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr7:65927600-65957600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr7:65927800-65939200	Weak transcription	K562	blood
49	chr7:65928800-65939000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:65929400-65935200	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links