Variant report
| Variant | rs531352290 |
|---|---|
| Chromosome Location | chr1:172147928-172147929 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:172123400-172149200 | Weak transcription | Brain Anterior Caudate | brain |
| 2 | chr1:172128400-172149800 | Weak transcription | Aorta | Aorta |
| 3 | chr1:172132800-172150000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 4 | chr1:172138400-172149800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 5 | chr1:172139600-172148000 | Weak transcription | Fetal Stomach | stomach |
| 6 | chr1:172142200-172149600 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 7 | chr1:172143600-172148000 | Weak transcription | Colon Smooth Muscle | Colon |
| 8 | chr1:172145800-172150000 | Weak transcription | Psoas Muscle | Psoas |
| 9 | chr1:172146000-172149000 | Weak transcription | Fetal Kidney | kidney |
| 10 | chr1:172146400-172149600 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 11 | chr1:172146600-172150200 | Enhancers | Stomach Mucosa | stomach |
| 12 | chr1:172146800-172148400 | Enhancers | Placenta Amnion | Placenta Amnion |
| 13 | chr1:172146800-172152000 | Enhancers | Fetal Intestine Small | intestine |
| 14 | chr1:172147200-172149000 | Enhancers | Fetal Lung | lung |
| 15 | chr1:172147400-172154000 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 16 | chr1:172147600-172148000 | Active TSS | GM12878-XiMat | blood |
| 17 | chr1:172147600-172149600 | Enhancers | Small Intestine | intestine |
| 18 | chr1:172147600-172151200 | Enhancers | Fetal Intestine Large | intestine |
| 19 | chr1:172147800-172148200 | Enhancers | Brain Hippocampus Middle | brain |
| 20 | chr1:172147800-172148200 | Enhancers | Brain Inferior Temporal Lobe | brain |
| 21 | chr1:172147800-172148400 | Enhancers | Brain Angular Gyrus | brain |
| 22 | chr1:172147800-172148400 | Enhancers | Ovary | ovary |
