Variant report

Variant	rs531449965
Chromosome Location	chr7:66036632-66036633
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv482441	chr7:65885824-66061788	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	esv3377926	chr7:65934493-66051484	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	esv3423847	chr7:65941210-66054107	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
9	nsv970868	chr7:66035219-66056610	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66004400-66052600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:66004800-66037200	Weak transcription	Psoas Muscle	Psoas
3	chr7:66008600-66056000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:66011000-66037000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:66011600-66045000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:66019800-66037400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:66020000-66037400	Weak transcription	Small Intestine	intestine
8	chr7:66021800-66056400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:66022000-66039000	Weak transcription	Aorta	Aorta
10	chr7:66023000-66037400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:66023000-66040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr7:66023000-66041800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:66023200-66036800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr7:66023200-66043800	Weak transcription	Fetal Heart	heart
15	chr7:66023200-66044400	Weak transcription	Right Atrium	heart
16	chr7:66023200-66048400	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:66023200-66049800	Weak transcription	Stomach Mucosa	stomach
18	chr7:66023200-66055400	Weak transcription	Fetal Brain Male	brain
19	chr7:66023600-66042200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr7:66024000-66037200	Weak transcription	Brain Hippocampus Middle	brain
21	chr7:66024000-66037200	Weak transcription	Colonic Mucosa	Colon
22	chr7:66024000-66037200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:66024000-66039000	Weak transcription	Right Ventricle	heart
24	chr7:66024000-66046400	Weak transcription	NHLF	lung
25	chr7:66024200-66037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:66024200-66040400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr7:66024200-66051200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:66024200-66055400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:66024200-66055600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:66024400-66036800	Weak transcription	Esophagus	oesophagus
31	chr7:66024400-66037200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:66024400-66038800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:66024400-66051600	Weak transcription	Spleen	Spleen
34	chr7:66025200-66037200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:66027600-66042400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr7:66028600-66038800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:66028600-66042000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:66028800-66042000	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr7:66028800-66042000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr7:66029000-66041400	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr7:66029000-66042000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr7:66029000-66042800	Strong transcription	Dnd41	blood
43	chr7:66029200-66038800	Strong transcription	K562	blood
44	chr7:66029400-66038800	Weak transcription	Gastric	stomach
45	chr7:66029400-66038800	Weak transcription	Ovary	ovary
46	chr7:66029400-66046200	Weak transcription	Pancreas	Pancrea
47	chr7:66030000-66038800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr7:66030400-66039400	Strong transcription	Liver	Liver
49	chr7:66030400-66040400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:66030600-66042600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links