Variant report

Variant	rs531478860
Chromosome Location	chr10:26140898-26140899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3411313	chr10:26139815-26143622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3482285	chr10:26139862-26143599	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3323523	chr10:26139880-26143583	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3482396	chr10:26139901-26143556	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3482507	chr10:26139901-26143556	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv11326	chr10:26139994-26143360	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26138000-26141400	Enhancers	Brain Germinal Matrix	brain
2	chr10:26138000-26142200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:26138600-26141600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26138800-26141600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:26138800-26141800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:26138800-26142000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:26138800-26142000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:26140400-26141400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:26140400-26142000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:26140600-26141600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:26140600-26141800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr10:26140600-26141800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:26140800-26141400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:26140800-26141600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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