Variant report

Variant	rs531507513
Chromosome Location	chr16:81479445-81479446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81477412..81480094-chr16:81509013..81511595,4	MCF-7	breast:
2	chr16:81347539..81350872-chr16:81478035..81482618,4	MCF-7	breast:
3	chr16:81479233..81481383-chr16:81669168..81671118,2	MCF-7	breast:
4	chr16:81477150..81481169-chr16:81642368..81644770,3	MCF-7	breast:
5	chr16:81479204..81482002-chr16:81562835..81564936,2	MCF-7	breast:
6	chr16:81476822..81479616-chr16:81528551..81531319,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261609	Chromatin interaction
ENSG00000260229	Chromatin interaction
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	esv34108	chr16:81469090-81510471	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	esv3364489	chr16:81476951-81480349	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	esv3333736	chr16:81477276-81479824	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	esv3435927	chr16:81477351-81480049	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	esv3402692	chr16:81477376-81480074	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
9	esv14652	chr16:81478084-81479610	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81477400-81480000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr16:81477400-81481000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr16:81477600-81479600	Active TSS	HSMM	muscle
4	chr16:81477600-81480000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr16:81477600-81480400	Active TSS	Thymus	Thymus
6	chr16:81477600-81480600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:81477600-81480800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:81477600-81481800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr16:81477800-81479600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr16:81477800-81479600	Active TSS	NHLF	lung
11	chr16:81477800-81479800	Active TSS	Aorta	Aorta
12	chr16:81477800-81479800	Active TSS	NH-A	brain
13	chr16:81477800-81480000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:81477800-81480000	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr16:81477800-81480000	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr16:81477800-81480000	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr16:81477800-81480000	Active TSS	Osteobl	bone
18	chr16:81477800-81480200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr16:81477800-81480400	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr16:81477800-81480400	Active TSS	HSMMtube	muscle
21	chr16:81477800-81480600	Active TSS	Small Intestine	intestine
22	chr16:81477800-81480800	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr16:81477800-81480800	Active TSS	Ovary	ovary
24	chr16:81477800-81481000	Active TSS	Fetal Brain Female	brain
25	chr16:81477800-81481200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr16:81477800-81481600	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr16:81478000-81479600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr16:81478000-81479600	Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr16:81478000-81479600	Active TSS	Hela-S3	cervix
30	chr16:81478000-81479600	Active TSS	K562	blood
31	chr16:81478000-81479800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr16:81478000-81479800	Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr16:81478000-81479800	Active TSS	HUVEC	blood vessel
34	chr16:81478000-81480000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr16:81478000-81480000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr16:81478000-81480000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr16:81478000-81480200	Active TSS	Primary monocytes fromperipheralblood	blood
38	chr16:81478000-81480200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr16:81478000-81480200	Active TSS	Stomach Smooth Muscle	stomach
40	chr16:81478000-81480400	Active TSS	Colonic Mucosa	Colon
41	chr16:81478000-81480400	Active TSS	Fetal Stomach	stomach
42	chr16:81478000-81480600	Active TSS	H1 Cell Line	embryonic stem cell
43	chr16:81478000-81480600	Active TSS	Left Ventricle	heart
44	chr16:81478000-81480600	Active TSS	Pancreas	Pancrea
45	chr16:81478000-81480600	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr16:81478000-81480800	Active TSS	Psoas Muscle	Psoas
47	chr16:81478000-81481000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr16:81478000-81481000	Active TSS	Esophagus	oesophagus
49	chr16:81478000-81481000	Active TSS	Fetal Intestine Large	intestine
50	chr16:81478000-81481000	Active TSS	Fetal Intestine Small	intestine

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