Variant report

Variant	rs531510119
Chromosome Location	chr4:26944802-26944803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26935465..26938431-chr4:26942635..26945108,2	K562	blood:
2	chr4:26942817..26944848-chr4:27002109..27004876,2	K562	blood:

Variant related genes	Relation type
ENSG00000109689	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv966490	chr4:26940200-26946323	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1000535	chr4:26944042-26955394	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26911600-26965800	Weak transcription	HMEC	breast
2	chr4:26923200-26965800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:26923200-26977200	Weak transcription	Thymus	Thymus
4	chr4:26923400-26954400	Weak transcription	HSMM	muscle
5	chr4:26923400-26960600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:26924400-26955200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:26938000-26945000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:26938600-26969000	Weak transcription	Gastric	stomach
9	chr4:26938800-26945000	Weak transcription	Psoas Muscle	Psoas
10	chr4:26938800-26965600	Weak transcription	NHLF	lung
11	chr4:26939000-26954000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:26939200-26948000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:26939200-26949200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr4:26939200-26969000	Weak transcription	Pancreas	Pancrea
15	chr4:26940200-26945200	Enhancers	Ovary	ovary
16	chr4:26940400-26945600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr4:26940400-26947800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:26941400-26945400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr4:26942000-26961000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr4:26942400-26945200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr4:26942600-26950400	Weak transcription	Left Ventricle	heart
22	chr4:26942800-26947000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:26942800-26948000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:26943000-26948000	Weak transcription	Primary B cells from cord blood	blood
25	chr4:26943200-26955000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:26943800-26945200	Enhancers	Brain Angular Gyrus	brain
27	chr4:26943800-26945200	Enhancers	Fetal Lung	lung
28	chr4:26943800-26945400	Enhancers	Brain Cingulate Gyrus	brain
29	chr4:26943800-26945400	Enhancers	Brain Hippocampus Middle	brain
30	chr4:26944000-26950600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr4:26944000-26952000	Weak transcription	Primary T cells from cord blood	blood
32	chr4:26944200-26949800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:26944200-26952000	Weak transcription	Fetal Stomach	stomach
34	chr4:26944200-26952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr4:26944400-26945000	Weak transcription	Brain Substantia Nigra	brain
36	chr4:26944400-26945200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr4:26944400-26965600	Weak transcription	Brain Anterior Caudate	brain
38	chr4:26944600-26945000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr4:26944600-26945200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr4:26944600-26948000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr4:26944800-26945400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links