Variant report

Variant	rs531526544
Chromosome Location	chr11:66089129-66089130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66054004..66059089-chr11:66088488..66094920,9	MCF-7	breast:
2	chr11:66080788..66082813-chr11:66088055..66089641,2	K562	blood:

Variant related genes	Relation type
ENSG00000174851	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
6	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
7	esv3339891	chr11:66088976-66093674	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66084600-66103200	Weak transcription	Small Intestine	intestine
2	chr11:66085800-66089200	Weak transcription	Right Atrium	heart
3	chr11:66086200-66089200	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:66086200-66090600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:66086200-66091800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:66086200-66092000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:66086200-66095400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:66086400-66092200	Weak transcription	Lung	lung
9	chr11:66086400-66092400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:66086400-66092600	Weak transcription	Colonic Mucosa	Colon
11	chr11:66086600-66090000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:66086600-66091800	Weak transcription	HSMM	muscle
13	chr11:66086600-66092600	Weak transcription	Right Ventricle	heart
14	chr11:66086600-66093600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:66086600-66095000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:66086800-66089200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:66086800-66089200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:66086800-66089200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:66086800-66089200	Weak transcription	NHLF	lung
20	chr11:66086800-66089200	Weak transcription	Osteobl	bone
21	chr11:66086800-66089400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:66086800-66090000	Weak transcription	Fetal Stomach	stomach
23	chr11:66086800-66091000	Weak transcription	Spleen	Spleen
24	chr11:66086800-66091600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr11:66086800-66091800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:66086800-66091800	Weak transcription	Fetal Lung	lung
27	chr11:66086800-66091800	Weak transcription	Hela-S3	cervix
28	chr11:66086800-66092200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:66086800-66092400	Weak transcription	Fetal Intestine Large	intestine
30	chr11:66086800-66093200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:66086800-66093600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:66086800-66093600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:66087000-66089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:66087000-66090400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:66087000-66091600	Weak transcription	Esophagus	oesophagus
36	chr11:66087200-66090000	Weak transcription	Thymus	Thymus
37	chr11:66087200-66091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:66087200-66093400	Weak transcription	Fetal Intestine Small	intestine
39	chr11:66088000-66089800	Weak transcription	Placenta	Placenta
40	chr11:66088800-66090200	Enhancers	Primary T cells from cord blood	blood
41	chr11:66089000-66089200	Enhancers	Fetal Brain Female	brain
42	chr11:66089000-66089400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:66089000-66089600	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr11:66089000-66089800	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr11:66089000-66090200	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr11:66089000-66090200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr11:66089000-66090600	Enhancers	Primary T cells fromperipheralblood	blood
48	chr11:66089000-66090600	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr11:66089000-66090600	Enhancers	Fetal Muscle Leg	muscle
50	chr11:66089000-66090800	Enhancers	Fetal Thymus	thymus

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