The 2.0 version of rSNPBase

Variant report

Variant rs531540085
Chromosome Location chr13:97772564-97772565
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:97762800-97773600 Weak transcription K562 blood
2 chr13:97766800-97778200 Weak transcription Esophagus oesophagus
3 chr13:97767800-97776600 Weak transcription Gastric stomach
4 chr13:97767800-97777200 Weak transcription Fetal Kidney kidney
5 chr13:97768000-97772800 Weak transcription NHDF-Ad bronchial
6 chr13:97768000-97773000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr13:97768000-97773000 Weak transcription A549 lung
8 chr13:97768000-97777000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr13:97768600-97774000 Weak transcription Placenta Placenta
10 chr13:97768800-97775600 Weak transcription Lung lung
11 chr13:97768800-97776200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr13:97769000-97778400 Weak transcription Right Atrium heart
13 chr13:97769200-97772600 Weak transcription Brain Cingulate Gyrus brain
14 chr13:97769200-97772600 Weak transcription HSMMtube muscle
15 chr13:97769200-97772800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr13:97769200-97772800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr13:97769200-97772800 Weak transcription NH-A brain
18 chr13:97769200-97774800 Weak transcription Brain Hippocampus Middle brain
19 chr13:97769400-97772600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr13:97769400-97772800 Weak transcription Brain Anterior Caudate brain
21 chr13:97769400-97772800 Weak transcription NHLF lung
22 chr13:97769600-97772600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr13:97769600-97773000 Weak transcription HSMM muscle
24 chr13:97769600-97774200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr13:97770000-97772800 Weak transcription Hela-S3 cervix
26 chr13:97770000-97774800 Weak transcription Stomach Mucosa stomach
27 chr13:97770200-97773800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr13:97770200-97774000 Weak transcription Right Ventricle heart
29 chr13:97770200-97775000 Weak transcription Aorta Aorta
30 chr13:97770200-97775000 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr13:97770200-97775000 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr13:97770200-97776600 Weak transcription Fetal Stomach stomach
33 chr13:97770200-97777200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr13:97770400-97774000 Weak transcription Fetal Heart heart
35 chr13:97770400-97777000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr13:97770600-97774600 Weak transcription Pancreatic Islets Pancreatic Islet
37 chr13:97770800-97774000 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr13:97770800-97775000 Weak transcription Ovary ovary
39 chr13:97770800-97775000 Weak transcription Stomach Smooth Muscle stomach
40 chr13:97770800-97776200 Weak transcription Left Ventricle heart
41 chr13:97770800-97777400 Weak transcription Psoas Muscle Psoas
42 chr13:97771400-97773200 Enhancers Colon Smooth Muscle Colon
43 chr13:97771400-97775800 Enhancers NHEK skin
44 chr13:97771400-97777800 Enhancers HMEC breast
45 chr13:97771400-97779600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr13:97771600-97772800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
47 chr13:97771600-97773600 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr13:97771600-97775600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
49 chr13:97771800-97772800 Weak transcription Fetal Lung lung
50 chr13:97771800-97774200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015