Variant report

Variant	rs531585405
Chromosome Location	chr7:108230189-108230190
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv971141	chr7:108229374-108235129	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108223000-108233200	Weak transcription	Small Intestine	intestine
2	chr7:108225000-108230400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:108226800-108230400	Weak transcription	Right Atrium	heart
4	chr7:108229200-108234400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:108229400-108230600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:108229800-108230600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:108229800-108230600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:108229800-108230600	Enhancers	HMEC	breast
9	chr7:108229800-108234000	Enhancers	Fetal Intestine Small	intestine
10	chr7:108230000-108230400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:108230000-108230800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:108230000-108230800	Enhancers	Fetal Heart	heart
13	chr7:108230000-108230800	Enhancers	HSMM	muscle
14	chr7:108230000-108230800	Enhancers	HSMMtube	muscle
15	chr7:108230000-108231200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:108230000-108234000	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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