Variant report

Variant	rs531587685
Chromosome Location	chr18:61834277-61834278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061206	chr18:61366124-61916842	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv543733	chr18:61366124-61916842	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv16044	chr18:61382356-61945364	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv909694	chr18:61766039-61986584	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv909695	chr18:61766946-61857065	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1060298	chr18:61828056-61989273	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv543734	chr18:61828056-61989273	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv961137	chr18:61831310-61835684	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	nsv1067253	chr18:61833217-61985268	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2762855	chr18:61833229-61988481	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:61832000-61835200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr18:61832000-61835400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr18:61832000-61835600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr18:61833000-61835000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr18:61833000-61835200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:61833000-61835200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:61833000-61835600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:61833000-61835600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr18:61833000-61835600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr18:61833200-61834800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr18:61833200-61835200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr18:61833800-61834600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr18:61834000-61834600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr18:61834200-61834800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr18:61834200-61835200	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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