Variant report

Variant	rs531595422
Chromosome Location	chr3:140544615-140544616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008838	chr3:140355975-140588726	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877547	chr3:140366948-140575287	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv829743	chr3:140384246-140559778	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1005522	chr3:140454632-140685915	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv536732	chr3:140454632-140685915	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv877548	chr3:140514022-140590632	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv877549	chr3:140521178-140590632	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv4038	chr3:140536961-140579494	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1850392	chr3:140540011-140550923	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
11	nsv591866	chr3:140542380-140546807	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv1835828	chr3:140542380-140546916	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv591867	chr3:140542380-140546916	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv591868	chr3:140542380-140547006	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3461187	chr3:140542462-140548960	Weak transcription Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
16	esv3348506	chr3:140543262-140548160	Bivalent/Poised TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3461193	chr3:140543487-140548235	Weak transcription Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
18	esv3416149	chr3:140543712-140548110	Bivalent/Poised TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
19	esv2486016	chr3:140543866-140547877	Weak transcription Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	diseases
20	esv3461192	chr3:140543983-140547409	Weak transcription Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	diseases
21	nsv511218	chr3:140544057-140548881	Enhancers Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
22	nsv513079	chr3:140544086-140547063	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
23	nsv819935	chr3:140544135-140547867	Bivalent/Poised TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv2362639	chr3:140544204-140547236	Bivalent/Poised TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
25	esv3461188	chr3:140544272-140547144	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
26	esv3495938	chr3:140544317-140547132	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
27	esv3495936	chr3:140544322-140547093	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
28	esv3461189	chr3:140544330-140547110	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
29	esv3461191	chr3:140544332-140547111	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
30	esv3461194	chr3:140544342-140547063	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv3495939	chr3:140544348-140547103	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
32	esv4783	chr3:140544348-140547167	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
33	esv3365033	chr3:140544365-140547062	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
34	esv3461190	chr3:140544390-140547047	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
35	esv3495937	chr3:140544400-140547050	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
36	nsv822267	chr3:140544403-140546754	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
37	esv991848	chr3:140544403-140546965	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
38	nsv822268	chr3:140544403-140546965	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
39	nsv499016	chr3:140544403-140547048	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
40	nsv820468	chr3:140544403-140547139	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
41	nsv822269	chr3:140544403-140547139	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
42	esv3461195	chr3:140544404-140547048	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
43	esv3495941	chr3:140544404-140547048	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
44	nsv236365	chr3:140544409-140547047	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
45	esv996004	chr3:140544427-140547049	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
46	esv17408	chr3:140544427-140547049	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
47	esv1795817	chr3:140544435-140546944	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
48	esv1800170	chr3:140544435-140546944	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
49	esv1804313	chr3:140544435-140546944	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
50	esv1813431	chr3:140544435-140546944	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140542000-140551400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:140542800-140546400	Weak transcription	HSMMtube	muscle
3	chr3:140544200-140547000	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links