Variant report

Variant	rs531633272
Chromosome Location	chr12:119983051-119983052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:119937748..119938697-chr12:119982531..119983098,2	MCF-7	breast:
2	chr12:119458654..119459221-chr12:119982551..119983369,2	MCF-7	breast:
3	chr12:119937781..119938725-chr12:119982582..119983300,3	MCF-7	breast:
4	chr12:119883491..119884533-chr12:119982499..119983404,3	K562	blood:
5	chr12:119882003..119882904-chr12:119982529..119983448,4	K562	blood:
6	chr12:119982545..119983214-chr12:120086741..120087696,2	MCF-7	breast:
7	chr12:119850295..119851264-chr12:119982488..119983086,2	MCF-7	breast:
8	chr12:118842442..118843019-chr12:119982575..119983400,2	K562	blood:
9	chr12:119937705..119938674-chr12:119982968..119983529,3	K562	blood:
10	chr12:119982938..119983443-chr12:120086752..120087363,2	K562	blood:
11	chr12:119881569..119882932-chr12:119981933..119983576,24	MCF-7	breast:
12	chr12:119856526..119857034-chr12:119982637..119983547,2	MCF-7	breast:
13	chr12:119882153..119882880-chr12:119982540..119983422,6	MCF-7	breast:
14	chr12:119982745..119983465-chr12:120086574..120087357,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv916688	chr12:119801814-120044407	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832529	chr12:119863378-120071646	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1035871	chr12:119964240-119994062	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119983000-119983200	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links