Variant report

Variant	rs531635539
Chromosome Location	chr3:133543282-133543283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133543192..133545782-chr3:133562940..133564670,2	MCF-7	breast:
2	chr3:133538391..133540187-chr3:133540982..133543508,2	K562	blood:
3	chr3:133380579..133382285-chr3:133542068..133543624,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SRPRB-1	chr3:133543100-133546531	NONHSAT092207

Variant related genes	Relation type
ENSG00000163781	Chromatin interaction
ENSG00000242337	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv3413841	chr3:133542762-133545960	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133526200-133543400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:133526400-133543800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr3:133526400-133544000	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr3:133526400-133544000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr3:133526600-133543400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:133526600-133544800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr3:133526600-133544800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr3:133526800-133544000	Strong transcription	Liver	Liver
9	chr3:133526800-133544800	Strong transcription	Duodenum Mucosa	Duodenum
10	chr3:133527000-133545000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:133527200-133545000	Strong transcription	Dnd41	blood
12	chr3:133528000-133543400	Strong transcription	Fetal Thymus	thymus
13	chr3:133529200-133545200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:133533600-133543400	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr3:133533600-133543600	Strong transcription	Fetal Intestine Large	intestine
16	chr3:133533600-133545000	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:133533600-133546200	Strong transcription	Stomach Smooth Muscle	stomach
18	chr3:133536400-133543600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:133537400-133545600	Strong transcription	Fetal Muscle Leg	muscle
20	chr3:133537800-133544800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:133538000-133543800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr3:133538000-133544800	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:133538200-133543800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr3:133538200-133544000	Strong transcription	Lung	lung
25	chr3:133538200-133544200	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr3:133538200-133544400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:133538200-133544600	Strong transcription	Primary hematopoietic stem cells	blood
28	chr3:133538200-133544600	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:133538200-133544600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr3:133538400-133543400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:133538400-133543600	Strong transcription	Thymus	Thymus
32	chr3:133538400-133543800	Strong transcription	Placenta	Placenta
33	chr3:133538400-133544000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:133538400-133544000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:133538400-133544000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:133538400-133544000	Strong transcription	Colonic Mucosa	Colon
37	chr3:133538400-133544000	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:133538400-133544200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr3:133538400-133544200	Strong transcription	Aorta	Aorta
40	chr3:133538400-133544800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:133538400-133544800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr3:133538400-133544800	Strong transcription	Ovary	ovary
43	chr3:133538400-133545000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr3:133538400-133545000	Strong transcription	Spleen	Spleen
45	chr3:133538400-133545600	Strong transcription	Primary B cells from cord blood	blood
46	chr3:133538400-133546200	Strong transcription	Primary T cells from cord blood	blood
47	chr3:133538400-133546200	Strong transcription	Fetal Intestine Small	intestine
48	chr3:133538400-133546200	Strong transcription	Fetal Stomach	stomach
49	chr3:133538600-133545800	Strong transcription	Fetal Brain Female	brain
50	chr3:133539000-133545000	Strong transcription	Gastric	stomach

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