Variant report

Variant	rs531734920
Chromosome Location	chr13:96331754-96331755
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:96331069-96332293	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96327839..96330034-chr13:96330873..96332549,2	MCF-7	breast:

Variant related genes	Relation type
DNAJC3-AS1	TF binding region
ENSG00000102580	Chromatin interaction
ENSG00000247400	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96325600-96332400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:96327000-96331800	Active TSS	GM12878-XiMat	blood
3	chr13:96328000-96332000	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr13:96329600-96332400	Active TSS	Right Atrium	heart
5	chr13:96330000-96331800	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr13:96330200-96332000	Flanking Active TSS	Dnd41	blood
7	chr13:96330200-96333200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr13:96330200-96340800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:96330400-96332200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:96330600-96331800	Enhancers	Primary B cells from peripheral blood	blood
11	chr13:96330600-96331800	Enhancers	Small Intestine	intestine
12	chr13:96330600-96331800	Active TSS	Thymus	Thymus
13	chr13:96330600-96332000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr13:96330600-96332000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr13:96330600-96332400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr13:96330600-96336400	Weak transcription	Gastric	stomach
17	chr13:96330600-96336800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:96330600-96340800	Weak transcription	Spleen	Spleen
19	chr13:96330800-96331800	Enhancers	Adipose Nuclei	Adipose
20	chr13:96330800-96331800	Enhancers	Fetal Thymus	thymus
21	chr13:96330800-96331800	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr13:96330800-96332000	Enhancers	Brain Anterior Caudate	brain
23	chr13:96330800-96332400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr13:96330800-96332400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr13:96330800-96333600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr13:96330800-96333800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr13:96330800-96334400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr13:96330800-96334400	Weak transcription	Fetal Brain Female	brain
29	chr13:96330800-96336000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr13:96330800-96336800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr13:96330800-96337000	Weak transcription	Lung	lung
32	chr13:96331000-96331800	Flanking Active TSS	NHLF	lung
33	chr13:96331000-96333400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr13:96331000-96336400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr13:96331000-96336400	Weak transcription	Fetal Stomach	stomach
36	chr13:96331200-96331800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr13:96331200-96331800	Active TSS	Primary hematopoietic stem cells	blood
38	chr13:96331200-96331800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr13:96331200-96331800	Enhancers	Colon Smooth Muscle	Colon
40	chr13:96331200-96331800	Enhancers	Stomach Mucosa	stomach
41	chr13:96331200-96332000	Enhancers	Brain Angular Gyrus	brain
42	chr13:96331200-96332000	Enhancers	Brain Cingulate Gyrus	brain
43	chr13:96331200-96332000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr13:96331200-96332200	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr13:96331200-96332200	Weak transcription	Colonic Mucosa	Colon
46	chr13:96331200-96332400	Enhancers	Fetal Heart	heart
47	chr13:96331200-96332600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr13:96331200-96332600	Enhancers	Fetal Intestine Large	intestine
49	chr13:96331200-96332600	Enhancers	Fetal Lung	lung
50	chr13:96331200-96333000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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