Variant report

Variant	rs531760372
Chromosome Location	chr13:48784499-48784500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3327569	chr13:48743550-48798094	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043294	chr13:48762477-48810028	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv1031	chr13:48766510-48790172	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3518051	chr13:48778434-48785921	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3518063	chr13:48778434-48785921	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv498811	chr13:48778651-48785786	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv13983	chr13:48782466-48785802	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv514697	chr13:48783003-48784891	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48783600-48785000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:48783600-48785000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:48783600-48785000	Enhancers	NHEK	skin
4	chr13:48783600-48785200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:48783600-48785200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:48783800-48784600	Enhancers	NHDF-Ad	bronchial
7	chr13:48783800-48784800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr13:48783800-48785000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr13:48783800-48785200	Enhancers	HMEC	breast
10	chr13:48784000-48784800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr13:48784000-48784800	Enhancers	HSMM	muscle
12	chr13:48784000-48785000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:48784000-48785000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:48784000-48785000	Enhancers	Osteobl	bone
15	chr13:48784000-48785200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:48784200-48784800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:48784200-48785000	Enhancers	Hela-S3	cervix
18	chr13:48784200-48792600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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