Variant report

Variant	rs531763466
Chromosome Location	chr11:9526752-9526753
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9526683..9529040-chr11:9771305..9773861,2	K562	blood:
2	chr11:9480912..9484218-chr11:9526454..9530428,5	K562	blood:

Variant related genes	Relation type
ENSG00000268403	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
3	nsv1039537	chr11:9455387-9535970	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	esv3437720	chr11:9523876-9528074	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3509391	chr11:9524576-9527874	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3509392	chr11:9524576-9527874	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3356439	chr11:9525333-9527227	Genic enhancers Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv512209	chr11:9525557-9527011	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3376002	chr11:9525633-9526899	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3468596	chr11:9525726-9526863	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3468607	chr11:9525726-9526863	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9484600-9544800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:9491400-9551600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:9492000-9527200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:9492800-9527800	Strong transcription	Fetal Stomach	stomach
5	chr11:9496600-9528200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:9501800-9534000	Weak transcription	Psoas Muscle	Psoas
7	chr11:9511600-9527800	Weak transcription	Hela-S3	cervix
8	chr11:9511600-9528200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:9511600-9528400	Weak transcription	NHLF	lung
10	chr11:9518600-9530000	Weak transcription	NHEK	skin
11	chr11:9518800-9534000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:9519200-9532000	Weak transcription	NHDF-Ad	bronchial
13	chr11:9519200-9534200	Weak transcription	Fetal Brain Female	brain
14	chr11:9520600-9528000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:9520600-9530000	Weak transcription	Stomach Mucosa	stomach
16	chr11:9520600-9532200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:9520800-9528200	Weak transcription	A549	lung
18	chr11:9521000-9545200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:9521200-9528200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:9521400-9526800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:9521400-9527800	Strong transcription	Fetal Intestine Small	intestine
22	chr11:9521600-9532200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:9521800-9530200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:9522000-9530400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:9523000-9534000	Weak transcription	HMEC	breast
26	chr11:9523200-9528000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:9523200-9528200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:9523200-9530200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:9523200-9530200	Weak transcription	HUVEC	blood vessel
30	chr11:9523400-9526800	Weak transcription	Lung	lung
31	chr11:9523400-9528000	Weak transcription	Brain Anterior Caudate	brain
32	chr11:9523400-9528000	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:9523400-9528000	Weak transcription	Fetal Kidney	kidney
34	chr11:9523400-9528000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:9523400-9528000	Weak transcription	HepG2	liver
36	chr11:9523400-9528200	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:9523400-9528200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:9523400-9528200	Weak transcription	Fetal Heart	heart
39	chr11:9523400-9528200	Weak transcription	Fetal Lung	lung
40	chr11:9523400-9528200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:9523400-9528400	Weak transcription	HSMMtube	muscle
42	chr11:9523400-9528600	Weak transcription	Dnd41	blood
43	chr11:9523400-9528800	Weak transcription	GM12878-XiMat	blood
44	chr11:9523400-9529000	Weak transcription	Primary B cells from cord blood	blood
45	chr11:9523400-9529800	Weak transcription	K562	blood
46	chr11:9523400-9530000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:9523400-9530000	Weak transcription	Left Ventricle	heart
48	chr11:9523400-9530200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:9523400-9530200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:9523400-9530200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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