Variant report

Variant	rs531792502
Chromosome Location	chr6:37673734-37673735
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37668297..37671248-chr6:37671352..37673734,2	K562	blood:
2	chr6:37666178..37668975-chr6:37671383..37675389,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFAND3-6	chr6:37672600-37674014	NONHSAT112283

Variant related genes	Relation type
ENSG00000112139	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv994460	chr6:37672682-37686270	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37671800-37674000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:37672600-37673800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:37672600-37673800	Active TSS	H1 Cell Line	embryonic stem cell
4	chr6:37672600-37673800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:37672600-37673800	Active TSS	Brain Angular Gyrus	brain
6	chr6:37672600-37673800	Active TSS	Fetal Brain Female	brain
7	chr6:37672600-37674000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:37672600-37674000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:37672800-37673800	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:37672800-37673800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:37672800-37673800	Flanking Active TSS	Primary B cells from peripheral blood	blood
12	chr6:37672800-37673800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:37672800-37673800	Enhancers	Spleen	Spleen
14	chr6:37672800-37674000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:37672800-37674000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:37672800-37674000	Flanking Active TSS	Brain Germinal Matrix	brain
17	chr6:37672800-37674000	Enhancers	Fetal Brain Male	brain
18	chr6:37672800-37674000	Flanking Active TSS	Fetal Muscle Trunk	muscle
19	chr6:37672800-37674000	Flanking Active TSS	Fetal Muscle Leg	muscle
20	chr6:37673000-37673800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:37673000-37673800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:37673000-37673800	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr6:37673000-37673800	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr6:37673000-37673800	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr6:37673000-37673800	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr6:37673000-37673800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:37673000-37673800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:37673000-37673800	Active TSS	Brain Anterior Caudate	brain
29	chr6:37673000-37673800	Active TSS	Colon Smooth Muscle	Colon
30	chr6:37673000-37673800	Active TSS	Fetal Intestine Large	intestine
31	chr6:37673000-37673800	Active TSS	Ovary	ovary
32	chr6:37673000-37673800	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr6:37673000-37673800	Active TSS	Rectal Smooth Muscle	rectum
34	chr6:37673000-37673800	Active TSS	Right Atrium	heart
35	chr6:37673000-37673800	Active TSS	A549	lung
36	chr6:37673000-37673800	Active TSS	K562	blood
37	chr6:37673000-37673800	Active TSS	NHDF-Ad	bronchial
38	chr6:37673000-37674000	Active TSS	H9 Cell Line	embryonic stem cell
39	chr6:37673000-37674000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:37673000-37674000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:37673000-37674000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:37673000-37674000	Active TSS	Brain Substantia Nigra	brain
43	chr6:37673000-37674000	Active TSS	Fetal Heart	heart
44	chr6:37673000-37674000	Active TSS	Fetal Lung	lung
45	chr6:37673000-37674000	Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr6:37673200-37673800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:37673200-37673800	Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr6:37673200-37673800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:37673200-37673800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:37673200-37673800	Active TSS	Primary T killer naive cells fromperipheralblood	blood

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