Variant report

Variant	rs531819517
Chromosome Location	chr4:142047031-142047032
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880170	chr4:142046828-142137165	Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142038600-142052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:142039000-142049200	Weak transcription	Fetal Brain Female	brain
3	chr4:142039400-142051800	Weak transcription	Aorta	Aorta
4	chr4:142041000-142047600	Weak transcription	Spleen	Spleen
5	chr4:142041000-142048600	Weak transcription	Adipose Nuclei	Adipose
6	chr4:142041000-142052200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:142042200-142047400	Weak transcription	Psoas Muscle	Psoas
8	chr4:142042200-142048200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:142042600-142048600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:142042800-142047400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:142043400-142047200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:142043600-142047400	Weak transcription	Right Ventricle	heart
13	chr4:142043600-142047600	Weak transcription	Fetal Stomach	stomach
14	chr4:142043600-142051800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:142043800-142047400	Weak transcription	Left Ventricle	heart
16	chr4:142044400-142051200	Weak transcription	Osteobl	bone
17	chr4:142044600-142047600	Weak transcription	Pancreas	Pancrea
18	chr4:142044600-142051600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:142044800-142051800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:142045400-142047600	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:142045600-142047600	Weak transcription	Right Atrium	heart
22	chr4:142045800-142047400	Weak transcription	Ovary	ovary
23	chr4:142045800-142048800	Enhancers	Fetal Heart	heart
24	chr4:142045800-142049000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:142045800-142051200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:142045800-142051200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr4:142046400-142048200	Enhancers	Rectal Smooth Muscle	rectum
28	chr4:142046600-142047200	Enhancers	Colon Smooth Muscle	Colon
29	chr4:142047000-142047200	Enhancers	Brain Substantia Nigra	brain
30	chr4:142047000-142048600	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links