Variant report

Variant	rs531898007
Chromosome Location	chr11:102419970-102419971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv826060	chr11:102414956-102425329	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv818861	chr11:102415859-102423890	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3367090	chr11:102419936-102420198	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102415400-102420200	Enhancers	GM12878-XiMat	blood
2	chr11:102416400-102429400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:102416600-102422000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:102416800-102434400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:102417400-102420800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:102417400-102422800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:102417800-102423600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:102418200-102423000	Weak transcription	HSMM	muscle
9	chr11:102418200-102423000	Weak transcription	Osteobl	bone
10	chr11:102418200-102423800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:102418800-102421400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:102419600-102421800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:102419600-102422000	Weak transcription	Gastric	stomach
14	chr11:102419600-102429200	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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