Variant report

Variant	rs531959878
Chromosome Location	chr2:145465796-145465797
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv529501	chr2:145257682-145485605	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv962041	chr2:145465093-145468381	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145450400-145469200	Weak transcription	Aorta	Aorta
2	chr2:145463200-145469600	Weak transcription	HSMMtube	muscle
3	chr2:145463200-145495600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:145464400-145469400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:145464600-145468400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr2:145464600-145473400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:145465000-145466200	Enhancers	Fetal Brain Female	brain
8	chr2:145465400-145466200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:145465400-145466600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:145465400-145467600	Enhancers	Brain Substantia Nigra	brain
11	chr2:145465400-145468000	Enhancers	NHDF-Ad	bronchial
12	chr2:145465600-145466000	Enhancers	Brain Angular Gyrus	brain
13	chr2:145465600-145466000	Flanking Active TSS	Brain Hippocampus Middle	brain
14	chr2:145465600-145467000	Enhancers	Brain Cingulate Gyrus	brain
15	chr2:145465600-145467000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr2:145465600-145467400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:145465600-145468800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:145465600-145469600	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links