The 2.0 version of rSNPBase

Variant report

Variant rs531960395
Chromosome Location chr1:93834520-93834521
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93813400-93840000 Weak transcription H9 Cell Line embryonic stem cell
2 chr1:93813400-93840400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:93815400-93839800 Weak transcription Aorta Aorta
4 chr1:93815600-93834800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:93816600-93841800 Weak transcription Brain Cingulate Gyrus brain
6 chr1:93816800-93841200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:93818000-93835400 Weak transcription Small Intestine intestine
8 chr1:93818400-93836000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
9 chr1:93818800-93837200 Weak transcription Fetal Kidney kidney
10 chr1:93819400-93834600 Strong transcription Primary B cells from peripheral blood blood
11 chr1:93820600-93837200 Weak transcription Colonic Mucosa Colon
12 chr1:93821000-93838800 Weak transcription Ovary ovary
13 chr1:93821200-93835200 Weak transcription Stomach Smooth Muscle stomach
14 chr1:93822200-93835800 Strong transcription Dnd41 blood
15 chr1:93822200-93840200 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr1:93823800-93834600 Weak transcription ES-WA7 Cell Line embryonic stem cell
17 chr1:93824200-93838200 Weak transcription Pancreas Pancrea
18 chr1:93824200-93839400 Weak transcription Lung lung
19 chr1:93824200-93839800 Weak transcription Fetal Brain Female brain
20 chr1:93824200-93840000 Weak transcription Right Ventricle heart
21 chr1:93824200-93841000 Weak transcription Brain Germinal Matrix brain
22 chr1:93824200-93841000 Weak transcription Spleen Spleen
23 chr1:93824400-93839400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:93824400-93839400 Weak transcription Brain Anterior Caudate brain
25 chr1:93824400-93842000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr1:93824600-93838200 Weak transcription Fetal Heart heart
27 chr1:93824600-93840000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr1:93825000-93836000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr1:93825200-93840800 Weak transcription Brain Inferior Temporal Lobe brain
30 chr1:93825400-93840600 Weak transcription iPS-15b Cell Line embryonic stem cell
31 chr1:93825600-93835200 Strong transcription HUES64 Cell Line embryonic stem cell
32 chr1:93825600-93839400 Weak transcription ES-I3 Cell Line embryonic stem cell
33 chr1:93826200-93841400 Weak transcription Brain Hippocampus Middle brain
34 chr1:93826400-93835800 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr1:93827600-93834600 Weak transcription Colon Smooth Muscle Colon
36 chr1:93827600-93834600 Weak transcription Stomach Mucosa stomach
37 chr1:93828200-93842400 Weak transcription Primary hematopoietic stem cells blood
38 chr1:93828400-93834600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr1:93828600-93834800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:93829200-93835400 Weak transcription Pancreatic Islets Pancreatic Islet
41 chr1:93829200-93843600 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr1:93829400-93835600 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr1:93829400-93835800 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr1:93829800-93839400 Weak transcription Adipose Nuclei Adipose
45 chr1:93830400-93836600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
46 chr1:93831400-93835200 Weak transcription Primary T helper naive cells from peripheral blood blood
47 chr1:93831400-93836800 Weak transcription Hela-S3 cervix
48 chr1:93831600-93834600 Weak transcription Rectal Smooth Muscle rectum
49 chr1:93831600-93834800 Weak transcription HUVEC blood vessel
50 chr1:93831600-93837600 Weak transcription HMEC breast

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Last update: Aug 31, 2015