Variant report

Variant	rs532016921
Chromosome Location	chr14:71497743-71497744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1039769	chr14:71310954-71525720	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv542128	chr14:71310954-71525720	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv565043	chr14:71395604-71625112	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1036929	chr14:71469148-71683412	Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71426000-71508800	Weak transcription	Psoas Muscle	Psoas
2	chr14:71438600-71502800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:71439600-71502800	Weak transcription	Small Intestine	intestine
4	chr14:71445200-71497800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:71445200-71502800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:71445200-71510800	Weak transcription	Colonic Mucosa	Colon
7	chr14:71445400-71498000	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:71445400-71502800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:71469600-71506200	Weak transcription	Fetal Heart	heart
10	chr14:71471200-71497800	Weak transcription	Gastric	stomach
11	chr14:71473000-71497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:71476000-71503200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr14:71477200-71503600	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:71480800-71498000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:71481000-71497800	Weak transcription	Brain Angular Gyrus	brain
16	chr14:71481000-71498000	Weak transcription	Brain Anterior Caudate	brain
17	chr14:71483000-71502800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr14:71483800-71506200	Weak transcription	Brain Substantia Nigra	brain
19	chr14:71485000-71503600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:71486800-71497800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:71486800-71498000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:71486800-71498000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr14:71486800-71502600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:71487200-71498400	Weak transcription	Fetal Kidney	kidney
25	chr14:71487200-71502800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr14:71487800-71503600	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr14:71488200-71503600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:71488400-71503600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:71488600-71497800	Weak transcription	Fetal Lung	lung
30	chr14:71488600-71503000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:71488800-71503600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr14:71489000-71498200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr14:71489000-71506000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr14:71489200-71498000	Weak transcription	Colon Smooth Muscle	Colon
35	chr14:71489200-71503600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr14:71489400-71497800	Weak transcription	NHEK	skin
37	chr14:71489400-71498000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:71489600-71503600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:71489800-71497800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:71489800-71503600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr14:71490200-71503000	Weak transcription	Hela-S3	cervix
42	chr14:71490200-71506000	Weak transcription	HUVEC	blood vessel
43	chr14:71490400-71499000	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:71490400-71502800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr14:71490600-71503600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr14:71490800-71503600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr14:71490800-71503600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:71491200-71503600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr14:71492200-71497800	Weak transcription	Placenta	Placenta
50	chr14:71492800-71498600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links