Variant report

Variant	rs532024
Chromosome Location	chr1:93708124-93708125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1536260	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249730	1.00[ASN][1000 genomes]
rs2265926	1.00[ASN][1000 genomes]
rs670254	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830625	chr1:93566378-93735246	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93647000-93756400	Weak transcription	Gastric	stomach
2	chr1:93647200-93757600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:93654200-93708400	Weak transcription	Esophagus	oesophagus
4	chr1:93657600-93708400	Weak transcription	Left Ventricle	heart
5	chr1:93661400-93708200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:93661800-93708200	Weak transcription	Fetal Brain Female	brain
7	chr1:93665400-93708400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:93665400-93708400	Weak transcription	Spleen	Spleen
9	chr1:93666600-93727000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:93668800-93708400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:93672600-93708400	Weak transcription	Placenta	Placenta
12	chr1:93682400-93708800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:93684800-93708400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:93685400-93708400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:93685600-93708400	Weak transcription	NH-A	brain
16	chr1:93685600-93709200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr1:93686600-93708400	Weak transcription	Aorta	Aorta
18	chr1:93686800-93708400	Weak transcription	Fetal Lung	lung
19	chr1:93688200-93714800	Weak transcription	HSMMtube	muscle
20	chr1:93689200-93708400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:93690200-93708600	Weak transcription	NHLF	lung
22	chr1:93690400-93729400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr1:93691200-93732400	Weak transcription	HUVEC	blood vessel
24	chr1:93692200-93787800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr1:93693400-93709200	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr1:93702400-93708600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:93703200-93708400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr1:93703400-93708400	Weak transcription	Fetal Intestine Large	intestine
29	chr1:93703600-93709200	Weak transcription	Fetal Heart	heart
30	chr1:93704000-93708400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr1:93704200-93729800	Weak transcription	Hela-S3	cervix
32	chr1:93704400-93708400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:93704800-93708400	Weak transcription	HepG2	liver
34	chr1:93704800-93708600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr1:93704800-93710800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:93705000-93708400	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr1:93705200-93708400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr1:93705200-93709000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:93705400-93709000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:93705400-93709400	ZNF genes & repeats	Dnd41	blood
41	chr1:93705600-93708400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr1:93706000-93708400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr1:93706200-93708400	Weak transcription	Adipose Nuclei	Adipose
44	chr1:93706200-93708600	Weak transcription	HMEC	breast
45	chr1:93706200-93708600	Weak transcription	NHDF-Ad	bronchial
46	chr1:93706200-93710200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
47	chr1:93706400-93708400	Weak transcription	Osteobl	bone
48	chr1:93706400-93709600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:93706400-93727000	Weak transcription	K562	blood
50	chr1:93706600-93708200	Strong transcription	Fetal Muscle Leg	muscle

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