Variant report

Variant	rs532061963
Chromosome Location	chr7:108096066-108096067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:108094270..108096861-chr7:108164817..108167585,2	MCF-7	breast:
2	chr1:149857130..149858704-chr7:108095136..108097059,2	MCF-7	breast:
3	chr7:108094702..108096715-chr7:108133980..108136057,2	MCF-7	breast:
4	chr7:107996666..108000210-chr7:108094187..108098858,6	MCF-7	breast:
5	chr2:172808708..172810698-chr7:108094975..108096588,2	MCF-7	breast:
6	chr7:108095582..108097658-chr7:108210312..108212186,2	MCF-7	breast:
7	chr7:107817682..107823715-chr7:108094168..108099407,9	MCF-7	breast:
8	chr20:45986504..45989171-chr7:108094917..108096710,2	MCF-7	breast:
9	chr7:108094254..108096481-chr7:108100316..108102970,2	K562	blood:
10	chr7:108056974..108058876-chr7:108094408..108096175,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000184678	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000091129	Chromatin interaction
ENSG00000266112	Chromatin interaction
ENSG00000128590	Chromatin interaction
ENSG00000135241	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	esv3358442	chr7:108095941-108098489	Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108094600-108097800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr7:108094800-108096200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:108094800-108096800	Active TSS	Brain Angular Gyrus	brain
4	chr7:108094800-108096800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
5	chr7:108094800-108097800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:108095000-108096200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:108095000-108096400	Bivalent/Poised TSS	Thymus	Thymus
8	chr7:108095000-108096600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
9	chr7:108095000-108096600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
10	chr7:108095000-108096800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
11	chr7:108095000-108096800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
12	chr7:108095000-108096800	Bivalent/Poised TSS	NHDF-Ad	bronchial
13	chr7:108095000-108097000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:108095000-108097000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:108095000-108097200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:108095000-108097200	Active TSS	HSMM	muscle
17	chr7:108095000-108097400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:108095000-108097400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:108095000-108097400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:108095000-108097400	Active TSS	A549	lung
21	chr7:108095000-108097600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:108095000-108097600	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr7:108095000-108097800	Active TSS	Fetal Brain Female	brain
24	chr7:108095000-108098000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
25	chr7:108095200-108096200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:108095200-108096200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
27	chr7:108095200-108096200	Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr7:108095200-108096200	Flanking Bivalent TSS/Enh	Right Ventricle	heart
29	chr7:108095200-108096400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
30	chr7:108095200-108096600	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr7:108095200-108096800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:108095200-108096800	Flanking Active TSS	Liver	Liver
33	chr7:108095200-108096800	Active TSS	Brain Substantia Nigra	brain
34	chr7:108095200-108096800	Active TSS	Fetal Brain Male	brain
35	chr7:108095200-108096800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
36	chr7:108095200-108097000	Active TSS	HSMMtube	muscle
37	chr7:108095200-108097000	Bivalent/Poised TSS	NHLF	lung
38	chr7:108095200-108097200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:108095200-108097200	Active TSS	Aorta	Aorta
40	chr7:108095200-108097200	Active TSS	Fetal Kidney	kidney
41	chr7:108095200-108097200	Active TSS	HUVEC	blood vessel
42	chr7:108095200-108097200	Bivalent/Poised TSS	Osteobl	bone
43	chr7:108095200-108097400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr7:108095200-108097600	Active TSS	H9 Cell Line	embryonic stem cell
45	chr7:108095200-108097600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
46	chr7:108095200-108097600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
47	chr7:108095200-108097600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr7:108095200-108097600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:108095200-108097800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
50	chr7:108095200-108097800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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