Variant report

Variant	rs532089217
Chromosome Location	chr6:134551669-134551670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXP2	chr6:134551494-134551681	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr6:134551415-134551910	HL-60	blood:	n/a	n/a
3	MAX	chr6:134551597-134551719	NB4	blood:	n/a	n/a
4	MYC	chr6:134551590-134551770	NB4	blood:	n/a	n/a
5	SPI1	chr6:134551363-134551882	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
SGK1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1018677	chr6:134512542-134638259	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538445	chr6:134512542-134638259	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1023931	chr6:134512542-134668702	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538446	chr6:134512542-134668702	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv441702	chr6:134550755-134557203	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134545800-134554600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:134547800-134557600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:134550200-134551800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:134550400-134552200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr6:134550600-134551800	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr6:134550600-134551800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:134550600-134552400	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:134550800-134551800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:134550800-134552000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:134550800-134552400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:134550800-134552400	Enhancers	Fetal Thymus	thymus
12	chr6:134551000-134564000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:134551200-134551800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:134551200-134551800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr6:134551200-134551800	Enhancers	HUVEC	blood vessel
16	chr6:134551400-134552800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr6:134551400-134554200	Weak transcription	Brain Anterior Caudate	brain
18	chr6:134551400-134558800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:134551400-134559600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:134551400-134560200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:134551600-134551800	Enhancers	Primary T cells from cord blood	blood
22	chr6:134551600-134551800	Enhancers	Brain Hippocampus Middle	brain
23	chr6:134551600-134551800	Flanking Active TSS	GM12878-XiMat	blood
24	chr6:134551600-134554400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:134551600-134561600	Weak transcription	Primary hematopoietic stem cells	blood

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