The 2.0 version of rSNPBase

Variant report

Variant rs532138225
Chromosome Location chr1:95501018-95501019
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95480000-95508800 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:95485200-95507000 Weak transcription Fetal Heart heart
3 chr1:95488000-95507000 Weak transcription Ovary ovary
4 chr1:95488200-95505400 Weak transcription Pancreas Pancrea
5 chr1:95488200-95507000 Weak transcription Rectal Smooth Muscle rectum
6 chr1:95488200-95537600 Weak transcription Right Ventricle heart
7 chr1:95488400-95507000 Weak transcription Brain Angular Gyrus brain
8 chr1:95488400-95507800 Weak transcription Brain Substantia Nigra brain
9 chr1:95488600-95507800 Weak transcription Colon Smooth Muscle Colon
10 chr1:95488800-95505400 Weak transcription Small Intestine intestine
11 chr1:95489400-95517200 Weak transcription Aorta Aorta
12 chr1:95491400-95503600 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr1:95491400-95507000 Weak transcription Fetal Kidney kidney
14 chr1:95491600-95529600 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:95492600-95507800 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:95492800-95504000 Weak transcription Fetal Adrenal Gland Adrenal Gland
17 chr1:95492800-95507000 Weak transcription Fetal Stomach stomach
18 chr1:95492800-95508800 Weak transcription Primary T cells from cord blood blood
19 chr1:95493400-95508800 Weak transcription Liver Liver
20 chr1:95495000-95504800 Weak transcription Esophagus oesophagus
21 chr1:95495200-95508000 Weak transcription HepG2 liver
22 chr1:95495200-95508800 Weak transcription Fetal Intestine Small intestine
23 chr1:95495400-95503800 Weak transcription Primary B cells from cord blood blood
24 chr1:95495400-95505800 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr1:95495400-95507000 Weak transcription Fetal Muscle Leg muscle
26 chr1:95497000-95508000 Weak transcription Left Ventricle heart
27 chr1:95497800-95501200 Enhancers Cortex derived primary cultured neurospheres brain
28 chr1:95499000-95501800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:95499200-95501200 Enhancers HSMMtube muscle
30 chr1:95499200-95501200 Enhancers NHDF-Ad bronchial
31 chr1:95499200-95501800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:95499200-95501800 Enhancers HSMM muscle
33 chr1:95499200-95501800 Enhancers NH-A brain
34 chr1:95499200-95501800 Enhancers Osteobl bone
35 chr1:95499200-95502000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:95499400-95501400 Enhancers NHLF lung
37 chr1:95499400-95501800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
38 chr1:95499400-95501800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
39 chr1:95499400-95501800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
40 chr1:95499400-95501800 Enhancers HMEC breast
41 chr1:95499400-95501800 Enhancers NHEK skin
42 chr1:95499400-95502000 Enhancers Muscle Satellite Cultured Cells --
43 chr1:95499400-95503200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
44 chr1:95499600-95502600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr1:95499800-95502600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
46 chr1:95500400-95501200 Enhancers Placenta Amnion Placenta Amnion
47 chr1:95500400-95501600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr1:95500400-95502600 Enhancers Breast Myoepithelial Primary Cells Breast
49 chr1:95500600-95507000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr1:95500800-95501200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015