Variant report

Variant	rs532141435
Chromosome Location	chr9:116112672-116112673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116109902..116113383-chr9:116162345..116166968,8	MCF-7	breast:
2	chr9:116110213..116113414-chr9:116171126..116174421,5	MCF-7	breast:
3	chr9:116111218..116114895-chr9:116159419..116161993,4	MCF-7	breast:
4	chr9:116108846..116117047-chr9:116126327..116140994,30	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148218	Chromatin interaction
ENSG00000148229	Chromatin interaction
ENSG00000119431	Chromatin interaction
ENSG00000157653	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv519849	chr9:116111407-116144973	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116111200-116112800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr9:116111200-116113000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr9:116111200-116113000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:116111200-116113000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr9:116111400-116112800	Active TSS	Pancreas	Pancrea
6	chr9:116111400-116113600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr9:116111400-116114000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr9:116111600-116112800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:116111600-116112800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
10	chr9:116111800-116113600	Active TSS	Gastric	stomach
11	chr9:116112000-116113400	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr9:116112000-116113400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:116112000-116114000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:116112200-116112800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
15	chr9:116112200-116112800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
16	chr9:116112200-116112800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
17	chr9:116112200-116112800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
18	chr9:116112200-116112800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
19	chr9:116112200-116112800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
20	chr9:116112200-116112800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
21	chr9:116112200-116112800	Flanking Bivalent TSS/Enh	HepG2	liver
22	chr9:116112200-116113000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:116112200-116113000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
24	chr9:116112200-116113000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr9:116112200-116113200	Bivalent Enhancer	Fetal Heart	heart
26	chr9:116112200-116113600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
27	chr9:116112200-116113600	Enhancers	Spleen	Spleen
28	chr9:116112200-116113800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:116112200-116113800	Flanking Active TSS	GM12878-XiMat	blood
30	chr9:116112400-116112800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
31	chr9:116112400-116112800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:116112400-116112800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:116112400-116112800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
34	chr9:116112400-116112800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:116112400-116112800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
36	chr9:116112400-116112800	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:116112400-116112800	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
38	chr9:116112400-116112800	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr9:116112400-116112800	Bivalent Enhancer	Psoas Muscle	Psoas
40	chr9:116112400-116112800	Flanking Active TSS	Rectal Smooth Muscle	rectum
41	chr9:116112400-116112800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
42	chr9:116112400-116112800	Flanking Active TSS	Stomach Mucosa	stomach
43	chr9:116112400-116112800	Bivalent Enhancer	Dnd41	blood
44	chr9:116112400-116112800	Enhancers	K562	blood
45	chr9:116112400-116113000	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:116112400-116113000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
47	chr9:116112400-116113000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
48	chr9:116112400-116113000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr9:116112400-116113000	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr9:116112400-116113000	Flanking Active TSS	Colonic Mucosa	Colon

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