Variant report

Variant	rs532163013
Chromosome Location	chr8:39942357-39942358
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1034355	chr8:39942179-39961432	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39939400-39943600	Weak transcription	Fetal Stomach	stomach
2	chr8:39939600-39943400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:39939600-39943600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:39940000-39942800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:39940000-39950000	Weak transcription	A549	lung
6	chr8:39940200-39943200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:39940600-39945000	Weak transcription	Ovary	ovary
8	chr8:39941000-39945000	Enhancers	Fetal Lung	lung
9	chr8:39941800-39944000	Weak transcription	HepG2	liver
10	chr8:39942000-39943400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:39942000-39943600	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:39942200-39942400	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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