Variant report

Variant	rs532294878
Chromosome Location	chr6:121774676-121774677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2763596	chr6:121774402-121788965	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121764200-121775200	Weak transcription	Psoas Muscle	Psoas
2	chr6:121769200-121776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:121769200-121776800	Weak transcription	Esophagus	oesophagus
4	chr6:121769400-121776400	Weak transcription	Aorta	Aorta
5	chr6:121769400-121779000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:121770200-121774800	Weak transcription	Ovary	ovary
7	chr6:121770800-121778800	Weak transcription	A549	lung
8	chr6:121771000-121776800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:121771400-121774800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:121771400-121775200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:121771400-121777200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:121771600-121774800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:121772200-121777200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:121772200-121777200	Weak transcription	Osteobl	bone
15	chr6:121773400-121775000	Enhancers	HUVEC	blood vessel
16	chr6:121774000-121775000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:121774600-121774800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:121774600-121775000	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links