Variant report

Variant	rs532305537
Chromosome Location	chr7:86827472-86827473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:86820172..86822835-chr7:86826143..86828085,2	K562	blood:
2	chr7:86780600..86784245-chr7:86826808..86830083,3	K562	blood:
3	chr7:86826595..86828118-chr7:86848559..86850853,2	MCF-7	breast:
4	chr7:86813289..86815868-chr7:86827062..86829282,2	K562	blood:
5	chr7:86826618..86828739-chr7:86829824..86832016,2	K562	blood:

Variant related genes	Relation type
ENSG00000224046	Chromatin interaction
ENSG00000135164	Chromatin interaction
ENSG00000135185	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	nsv888676	chr7:86781423-86858824	Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
7	nsv1026193	chr7:86790391-86856448	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv539003	chr7:86790391-86856448	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
10	nsv981812	chr7:86827166-86829678	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86783000-86834000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:86786600-86828400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:86788600-86830400	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:86788600-86832400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:86789000-86832400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:86789000-86832400	Strong transcription	Dnd41	blood
7	chr7:86789400-86830800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:86789600-86832400	Strong transcription	Fetal Thymus	thymus
9	chr7:86789800-86833000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:86791000-86831600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:86791200-86829400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:86791400-86830000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:86791400-86831800	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:86791400-86831800	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:86791600-86830600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr7:86791600-86830600	Strong transcription	NHDF-Ad	bronchial
17	chr7:86791800-86831000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:86792000-86829200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr7:86792400-86828600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:86792400-86828600	Strong transcription	HUVEC	blood vessel
21	chr7:86792400-86829800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr7:86792400-86831600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:86792600-86828800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:86792600-86829800	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr7:86792600-86830800	Strong transcription	Primary B cells from cord blood	blood
26	chr7:86792600-86832200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:86793400-86833400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:86794200-86832200	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr7:86803400-86831400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:86804600-86832400	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr7:86807000-86832200	Strong transcription	HSMM	muscle
32	chr7:86808600-86827800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr7:86808600-86828400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr7:86808600-86828800	Strong transcription	Liver	Liver
35	chr7:86808600-86830200	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr7:86808800-86827600	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr7:86808800-86827800	Strong transcription	Placenta	Placenta
38	chr7:86808800-86829200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:86808800-86830600	Strong transcription	Fetal Muscle Trunk	muscle
40	chr7:86809400-86829400	Strong transcription	Fetal Intestine Large	intestine
41	chr7:86810200-86827600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:86810200-86829000	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:86810600-86827600	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr7:86810600-86828600	Strong transcription	Adipose Nuclei	Adipose
45	chr7:86810600-86830000	Strong transcription	Fetal Lung	lung
46	chr7:86810600-86832200	Strong transcription	Osteobl	bone
47	chr7:86810800-86828200	Strong transcription	K562	blood
48	chr7:86810800-86830400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr7:86810800-86832000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:86811200-86828400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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