Variant report

Variant	rs532395583
Chromosome Location	chr4:22663363-22663364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3464911	chr4:22661054-22666352	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv10465	chr4:22662681-22667680	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a
5	esv3464913	chr4:22662968-22666332	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	esv3464909	chr4:22663012-22666293	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv3464912	chr4:22663017-22666252	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv3464910	chr4:22663023-22666309	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv3464914	chr4:22663093-22666232	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	esv3464915	chr4:22663109-22666228	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
11	esv17363	chr4:22663167-22666182	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22662200-22663800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:22662600-22663400	Enhancers	HMEC	breast
3	chr4:22663000-22663400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:22663000-22663400	Flanking Active TSS	NHEK	skin
5	chr4:22663200-22668000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:22663200-22668600	Weak transcription	Placenta	Placenta
7	chr4:22663200-22674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links