Variant report

Variant	rs532572150
Chromosome Location	chr11:120744964-120744965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120743310..120746214-chr11:120774459..120776517,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3417008	chr11:120744342-120748140	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	esv3395329	chr11:120744742-120749140	Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120704400-120746000	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:120704400-120748800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120714400-120746600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120715400-120745000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:120729200-120751200	Weak transcription	Ovary	ovary
6	chr11:120730000-120746600	Weak transcription	Fetal Lung	lung
7	chr11:120730800-120745200	Weak transcription	Brain Angular Gyrus	brain
8	chr11:120738600-120746800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:120738600-120747400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:120738600-120755600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:120739000-120749200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:120739200-120746000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:120739200-120755600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:120740200-120748200	Weak transcription	Brain Germinal Matrix	brain
15	chr11:120740200-120752400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:120740400-120752600	Weak transcription	Fetal Brain Male	brain
17	chr11:120740600-120746000	Weak transcription	Spleen	Spleen
18	chr11:120741400-120745200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:120742600-120746800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:120743200-120747600	Strong transcription	Brain Anterior Caudate	brain
21	chr11:120744000-120746800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:120744400-120746400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:120744800-120745000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:120744800-120745400	Bivalent Enhancer	HepG2	liver

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