The 2.0 version of rSNPBase

Variant report

Variant rs532639
Chromosome Location chr1:46024481-46024482
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46017000-46025800 Weak transcription Spleen Spleen
2 chr1:46017400-46027000 Weak transcription Aorta Aorta
3 chr1:46017400-46027400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:46017800-46026800 Weak transcription Brain Cingulate Gyrus brain
5 chr1:46017800-46026800 Weak transcription Brain Substantia Nigra brain
6 chr1:46017800-46026800 Weak transcription HSMMtube muscle
7 chr1:46017800-46027200 Weak transcription Placenta Amnion Placenta Amnion
8 chr1:46017800-46027400 Weak transcription Brain Hippocampus Middle brain
9 chr1:46017800-46027400 Weak transcription Brain Inferior Temporal Lobe brain
10 chr1:46017800-46027400 Weak transcription Gastric stomach
11 chr1:46017800-46032200 Weak transcription Brain Anterior Caudate brain
12 chr1:46017800-46038800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr1:46018000-46027400 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr1:46018000-46032200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
15 chr1:46018000-46038600 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr1:46018200-46037400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr1:46018400-46024800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:46018400-46025600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr1:46018400-46025800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
20 chr1:46018400-46026600 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr1:46018400-46026600 Weak transcription Muscle Satellite Cultured Cells --
22 chr1:46018400-46026800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:46018400-46026800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr1:46018400-46027200 Weak transcription Fetal Lung lung
25 chr1:46018400-46027400 Weak transcription Colon Smooth Muscle Colon
26 chr1:46018400-46027400 Weak transcription HUVEC blood vessel
27 chr1:46018400-46029600 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr1:46018400-46029800 Weak transcription NHDF-Ad bronchial
29 chr1:46018400-46032000 Weak transcription Fetal Kidney kidney
30 chr1:46018400-46032600 Weak transcription Fetal Brain Male brain
31 chr1:46018400-46036400 Strong transcription Fetal Stomach stomach
32 chr1:46018400-46036800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:46018400-46036800 Strong transcription HUES64 Cell Line embryonic stem cell
34 chr1:46018400-46036800 Strong transcription iPS-20b Cell Line embryonic stem cell
35 chr1:46018400-46037000 Strong transcription HUES48 Cell Line embryonic stem cell
36 chr1:46018600-46026800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:46018600-46026800 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr1:46018600-46027000 Weak transcription Esophagus oesophagus
39 chr1:46018600-46032000 Weak transcription Primary T helper naive cells from peripheral blood blood
40 chr1:46018600-46034200 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr1:46018600-46036800 Strong transcription H1 Cell Line embryonic stem cell
42 chr1:46018600-46037600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:46018600-46038200 Weak transcription Primary T killer naive cells fromperipheralblood blood
44 chr1:46019200-46032000 Strong transcription Primary monocytes fromperipheralblood blood
45 chr1:46020200-46026000 Weak transcription Lung lung
46 chr1:46020600-46025400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr1:46020600-46032200 Weak transcription Brain Angular Gyrus brain
48 chr1:46020800-46024600 Strong transcription Fetal Intestine Small intestine
49 chr1:46021400-46026800 Weak transcription Stomach Smooth Muscle stomach
50 chr1:46021600-46027400 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015