Variant report

Variant	rs532642702
Chromosome Location	chr6:13635637-13635638
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:13635216-13637804	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13634378..13636640-chr6:13639918..13642651,2	MCF-7	breast:
2	chr6:13615829..13619201-chr6:13633909..13638104,5	K562	blood:
3	chr6:13623977..13626863-chr6:13635237..13638133,2	K562	blood:
4	chr6:13635435..13638835-chr6:13664717..13667757,3	K562	blood:
5	chr6:13615100..13618262-chr6:13632919..13636030,3	K562	blood:
6	chr6:13633895..13638597-chr6:13710171..13713051,5	MCF-7	breast:
7	chr6:13635007..13636731-chr6:13678632..13680616,2	K562	blood:
8	chr6:13634147..13636935-chr6:13665092..13667757,2	K562	blood:
9	chr6:13633189..13636123-chr6:13700882..13703156,2	K562	blood:

No data

Variant related genes	Relation type
RANBP9	TF binding region
ENSG00000261071	Chromatin interaction
ENSG00000010017	Chromatin interaction
ENSG00000225921	Chromatin interaction
ENSG00000252966	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1016744	chr6:13622143-13664028	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019422	chr6:13622143-13694781	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1026597	chr6:13634669-13689882	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13616600-13637400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:13617200-13638800	Weak transcription	Aorta	Aorta
3	chr6:13617400-13636400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:13617600-13642200	Strong transcription	Fetal Thymus	thymus
5	chr6:13617600-13642200	Strong transcription	HSMM	muscle
6	chr6:13617600-13642400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:13617800-13638400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:13618000-13641200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:13618000-13644200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:13618200-13641800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:13618200-13644400	Strong transcription	K562	blood
12	chr6:13618200-13661200	Weak transcription	Fetal Brain Male	brain
13	chr6:13620000-13647200	Strong transcription	Dnd41	blood
14	chr6:13620000-13649600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:13620400-13660400	Weak transcription	Pancreas	Pancrea
16	chr6:13620600-13691000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:13622200-13636200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:13622200-13641600	Weak transcription	Right Ventricle	heart
19	chr6:13622800-13637600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:13622800-13638800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:13622800-13640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:13623600-13637600	Weak transcription	Brain Substantia Nigra	brain
23	chr6:13623600-13656200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:13625200-13638400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:13625200-13638600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:13625200-13638600	Weak transcription	Fetal Intestine Small	intestine
27	chr6:13625400-13660400	Weak transcription	Gastric	stomach
28	chr6:13625600-13637600	Weak transcription	NHLF	lung
29	chr6:13625600-13642600	Weak transcription	A549	lung
30	chr6:13626000-13660400	Weak transcription	Lung	lung
31	chr6:13626600-13637800	Weak transcription	Ovary	ovary
32	chr6:13626600-13667800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:13626800-13637800	Weak transcription	Colonic Mucosa	Colon
34	chr6:13626800-13669000	Weak transcription	Brain Anterior Caudate	brain
35	chr6:13627200-13637600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:13630200-13636200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:13630400-13638400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:13631000-13642600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:13632000-13637600	Weak transcription	Small Intestine	intestine
40	chr6:13632000-13638200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:13632000-13660400	Weak transcription	Psoas Muscle	Psoas
42	chr6:13632200-13636600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:13632200-13637400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:13632200-13637600	Weak transcription	Brain Angular Gyrus	brain
45	chr6:13632200-13638400	Weak transcription	Fetal Kidney	kidney
46	chr6:13632200-13641400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:13632400-13637400	Weak transcription	NH-A	brain
48	chr6:13632600-13635800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:13632600-13637200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:13632600-13656000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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