Variant report

Variant	rs532664791
Chromosome Location	chr3:20007440-20007441
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:19991471..19993830-chr3:20005089..20007556,2	MCF-7	breast:
2	chr3:19987695..19989238-chr3:20006327..20008572,3	MCF-7	breast:
3	chr3:19996748..19999658-chr3:20007262..20009565,3	K562	blood:
4	chr3:20002226..20004591-chr3:20006312..20009350,3	MCF-7	breast:
5	chr3:20002287..20004974-chr3:20006037..20009711,3	K562	blood:

Variant related genes	Relation type
ENSG00000144566	Chromatin interaction
ENSG00000163576	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828161	chr3:19547184-20062060	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv1825914	chr3:19549859-20137270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1833006	chr3:19562271-20389045	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	esv1826570	chr3:19579860-20077414	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv1833139	chr3:19579860-20121349	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv1826254	chr3:19592688-20042834	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1010613	chr3:19942032-20461486	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	esv1826030	chr3:19972766-20170581	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	esv1825988	chr3:19976375-20102773	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	esv1826830	chr3:19982972-20632072	Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
11	nsv997486	chr3:20006702-20113989	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:19989800-20018800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:19990000-20008600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:19990000-20016200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:19990800-20017000	Weak transcription	Fetal Kidney	kidney
5	chr3:19991400-20017000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:19992200-20012200	Weak transcription	Stomach Mucosa	stomach
7	chr3:19993600-20015600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:19993600-20023600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:19993800-20016200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:19993800-20023800	Weak transcription	Small Intestine	intestine
11	chr3:19994000-20015800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:19994000-20017400	Weak transcription	HSMMtube	muscle
13	chr3:19994600-20011600	Weak transcription	Brain Substantia Nigra	brain
14	chr3:19994600-20013800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:19995600-20017000	Weak transcription	Brain Germinal Matrix	brain
16	chr3:19995800-20016800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:19995800-20021800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:19996400-20017200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:19996400-20021000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:19996600-20015600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:19996600-20016800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:19996800-20007800	Weak transcription	Adipose Nuclei	Adipose
23	chr3:19997200-20013200	Weak transcription	HMEC	breast
24	chr3:19997200-20017000	Weak transcription	HUVEC	blood vessel
25	chr3:19997600-20011800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:19997600-20015200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:19997800-20008400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:19997800-20013200	Weak transcription	NHLF	lung
29	chr3:19997800-20015400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:19997800-20015600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr3:19997800-20016200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr3:19997800-20017000	Weak transcription	Brain Anterior Caudate	brain
33	chr3:19997800-20023200	Weak transcription	Spleen	Spleen
34	chr3:19998000-20011800	Weak transcription	Gastric	stomach
35	chr3:19998000-20017000	Weak transcription	HepG2	liver
36	chr3:19998200-20013200	Weak transcription	Osteobl	bone
37	chr3:19998400-20013200	Weak transcription	NHDF-Ad	bronchial
38	chr3:19998800-20011800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr3:19998800-20013600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:19999000-20011800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:19999000-20013400	Weak transcription	NH-A	brain
42	chr3:19999200-20011800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr3:19999600-20008200	Weak transcription	Liver	Liver
44	chr3:19999600-20027600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:20000000-20007600	Weak transcription	Hela-S3	cervix
46	chr3:20000400-20008400	Weak transcription	Pancreas	Pancrea
47	chr3:20000400-20011800	Weak transcription	Brain Hippocampus Middle	brain
48	chr3:20000600-20011800	Weak transcription	GM12878-XiMat	blood
49	chr3:20000800-20015600	Weak transcription	Fetal Lung	lung
50	chr3:20002000-20011600	Weak transcription	Ovary	ovary

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