Variant report

Variant	rs532690263
Chromosome Location	chr8:104460197-104460198
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:104452860..104455515-chr8:104457283..104461152,3	MCF-7	breast:
2	chr8:104460049..104462766-chr8:104465079..104467156,2	MCF-7	breast:
3	chr8:104426371..104428380-chr8:104460079..104462602,2	MCF-7	breast:
4	chr8:104448646..104450563-chr8:104458852..104463066,3	MCF-7	breast:
5	chr8:104426151..104429131-chr8:104459203..104461513,3	K562	blood:
6	chr8:104446427..104448471-chr8:104458737..104460308,2	MCF-7	breast:
7	chr8:104310642..104313127-chr8:104458418..104460483,2	MCF-7	breast:
8	chr8:104426715..104429412-chr8:104458698..104463744,5	MCF-7	breast:
9	chr8:104426151..104429283-chr8:104456389..104461513,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC25A32-3	chr8:104459868-104460278	NONHSAT128187

No data

Variant related genes	Relation type
ENSG00000164930	Chromatin interaction
ENSG00000164933	Chromatin interaction
ENSG00000247081	Chromatin interaction
ENSG00000164934	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1016395	chr8:104327541-104473005	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1023048	chr8:104355188-104872701	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv539705	chr8:104355188-104872701	ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1021345	chr8:104361854-104879684	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv1032085	chr8:104362187-104878345	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1034183	chr8:104369940-104814008	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv539707	chr8:104369940-104814008	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
11	nsv611832	chr8:104400808-104481735	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	esv2753239	chr8:104404824-104545824	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	esv2313775	chr8:104459882-104460322	Weak transcription Enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104428200-104462400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:104428200-104464800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:104428800-104460200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:104429000-104461400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:104430600-104461200	Weak transcription	Pancreas	Pancrea
6	chr8:104432000-104460600	Weak transcription	Small Intestine	intestine
7	chr8:104434400-104466600	Weak transcription	Psoas Muscle	Psoas
8	chr8:104434800-104462000	Weak transcription	Spleen	Spleen
9	chr8:104441800-104461200	Weak transcription	Esophagus	oesophagus
10	chr8:104441800-104462800	Weak transcription	Aorta	Aorta
11	chr8:104453600-104460800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:104453800-104461200	Weak transcription	Fetal Brain Female	brain
13	chr8:104454000-104462800	Weak transcription	Brain Anterior Caudate	brain
14	chr8:104454400-104460200	Weak transcription	K562	blood
15	chr8:104457400-104460600	Weak transcription	Osteobl	bone
16	chr8:104457400-104461200	Weak transcription	Fetal Thymus	thymus
17	chr8:104457400-104464800	Weak transcription	Fetal Intestine Small	intestine
18	chr8:104457600-104460400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:104457600-104461000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:104457800-104461000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr8:104458000-104460400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr8:104458000-104460600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr8:104458000-104461400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:104458200-104460400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:104458200-104460400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr8:104458200-104460600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:104458200-104460600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:104458200-104460800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr8:104458200-104464000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr8:104458200-104464000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr8:104458400-104460600	Weak transcription	NHEK	skin
32	chr8:104458400-104461400	Weak transcription	NH-A	brain
33	chr8:104458400-104464800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr8:104458400-104473400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr8:104458600-104460200	Weak transcription	HMEC	breast
36	chr8:104458600-104461200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:104458600-104464600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr8:104459000-104460600	Weak transcription	Primary B cells from cord blood	blood
39	chr8:104459200-104460400	Weak transcription	GM12878-XiMat	blood
40	chr8:104459200-104461200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:104459400-104461000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:104459400-104464000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:104459600-104461400	Weak transcription	HSMM	muscle
44	chr8:104459600-104462000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr8:104459600-104464200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:104459600-104472600	Weak transcription	Primary T cells from cord blood	blood
47	chr8:104459800-104461400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links