Variant report

Variant	rs532707912
Chromosome Location	chr2:74211788-74211789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:74210765-74213232	GM12878	blood:	n/a	n/a
2	POLR2A	chr2:74211225-74213109	NB4	blood:	n/a	n/a
3	ELF1	chr2:74211485-74211921	K562	blood:	n/a	chr2:74211652-74211665 chr2:74211729-74211741 chr2:74211841-74211853
4	TAF1	chr2:74210498-74211836	ECC-1	luminal epithelium:	n/a	n/a
5	CEBPD	chr2:74211462-74212420	HepG2	liver:	n/a	n/a
6	POLR2A	chr2:74211329-74212784	A549	lung:	n/a	n/a
7	STAT1	chr2:74211321-74212004	GM12878	blood:	n/a	n/a
8	MAX	chr2:74211310-74212262	HepG2	liver:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74212007-74212018 chr2:74212007-74212018
9	POLR2A	chr2:74211177-74212821	GM12878	blood:	n/a	n/a
10	POLR2A	chr2:74210578-74212297	GM12892	blood:	n/a	n/a
11	CREB1	chr2:74211591-74211967	A549	lung:	n/a	n/a
12	PML	chr2:74210348-74212317	GM12878	blood:	n/a	n/a
13	MAX	chr2:74211578-74212441	SK-N-SH	brain:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74212007-74212018 chr2:74212007-74212018
14	TCF7L2	chr2:74210640-74212797	HCT-116	colon:	n/a	n/a
15	POLR2A	chr2:74210759-74213608	GM19193	blood:	n/a	n/a
16	POLR2A	chr2:74211241-74212713	HepG2	liver:	n/a	n/a
17	E2F6	chr2:74211128-74212223	H1-hESC	embryonic stem cell:	n/a	chr2:74212028-74212040 chr2:74212028-74212037
18	POLR2A	chr2:74210769-74211905	HepG2	liver:	n/a	n/a
19	MAX	chr2:74211320-74212297	NB4	blood:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74212007-74212018 chr2:74212007-74212018
20	EP300	chr2:74210516-74212461	ECC-1	luminal epithelium:	n/a	chr2:74212012-74212028 chr2:74211731-74211747 chr2:74210842-74210858 chr2:74211646-74211659 chr2:74211611-74211620
21	MYC	chr2:74211237-74212388	MCF-7	breast:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74212007-74212018 chr2:74212007-74212018
22	POLR2A	chr2:74211545-74213099	HUVEC	blood vessel:	n/a	n/a
23	MAX	chr2:74210469-74212298	MCF-7	breast:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74211170-74211180 chr2:74212007-74212018 chr2:74212007-74212018
24	E2F6	chr2:74210614-74212293	H1-hESC	embryonic stem cell:	n/a	chr2:74212028-74212040 chr2:74212028-74212037
25	MAZ	chr2:74211184-74212266	HepG2	liver:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74212007-74212018 chr2:74212007-74212018
26	PAX5	chr2:74211230-74212201	GM12892	blood:	n/a	chr2:74211656-74211665 chr2:74211433-74211450 chr2:74211431-74211449
27	CCNT2	chr2:74211347-74213049	K562	blood:	n/a	chr2:74211893-74211902 chr2:74212839-74212848 chr2:74212028-74212037
28	UBTF	chr2:74211458-74211849	K562	blood:	n/a	n/a
29	RUNX3	chr2:74210799-74212154	GM12878	blood:	n/a	n/a
30	MYC	chr2:74211540-74212184	K562	blood:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74212007-74212018 chr2:74212007-74212018
31	NR3C1	chr2:74211269-74212479	A549	lung:	n/a	chr2:74211663-74211676
32	POLR2A	chr2:74208051-74212199	MCF10A-Er-Src	breast:	n/a	n/a
33	POLR2A	chr2:74210597-74212385	MCF-7	breast:	n/a	n/a
34	TCF3	chr2:74211328-74212300	GM12878	blood:	n/a	chr2:74211559-74211572 chr2:74211823-74211839
35	RUNX3	chr2:74211485-74212161	GM12878	blood:	n/a	n/a
36	MYC	chr2:74211610-74212180	K562	blood:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74212007-74212018 chr2:74212007-74212018
37	EGR1	chr2:74211665-74212084	GM12878	blood:	n/a	chr2:74211809-74211818 chr2:74212027-74212037 chr2:74211808-74211818 chr2:74211808-74211818 chr2:74211806-74211819 chr2:74211843-74211853 chr2:74211806-74211820
38	POLR2A	chr2:74211721-74212293	HCT-116	colon:	n/a	n/a
39	YY1	chr2:74211341-74212219	GM12892	blood:	n/a	chr2:74211727-74211738 chr2:74211841-74211852 chr2:74211608-74211622 chr2:74212028-74212037 chr2:74211730-74211744
40	MYC	chr2:74211623-74212186	GM12878	blood:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74212007-74212018 chr2:74212007-74212018
41	POLR2A	chr2:74211265-74213546	GM18526	blood:	n/a	n/a
42	RELA	chr2:74211593-74212154	GM19099	blood:	n/a	n/a
43	CHD2	chr2:74211583-74213231	Hela-S3	cervix:	n/a	chr2:74212029-74212039
44	E2F6	chr2:74211589-74212263	K562	blood:	n/a	chr2:74212028-74212040 chr2:74212028-74212037
45	HA-E2F1	chr2:74211482-74213149	Hela-S3	cervix:	n/a	chr2:74212028-74212040 chr2:74212028-74212037
46	BHLHE40	chr2:74211363-74212283	K562	blood:	n/a	chr2:74212008-74212017 chr2:74211727-74211743 chr2:74211730-74211746 chr2:74211733-74211749 chr2:74211738-74211754 chr2:74212008-74212017
47	MYC	chr2:74210151-74213343	A549	lung:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74211332-74211342 chr2:74211170-74211180 chr2:74213042-74213061 chr2:74212007-74212018 chr2:74212007-74212018
48	POLR2A	chr2:74210733-74212841	A549	lung:	n/a	n/a
49	HDAC2	chr2:74211605-74211923	K562	blood:	n/a	n/a
50	MYC	chr2:74211477-74212318	K562	blood:	n/a	chr2:74211806-74211813 chr2:74212008-74212017 chr2:74212007-74212018 chr2:74212007-74212018

No.	Distal block	Cell Line	Cell type
1	chr2:74055188..74061210-chr2:74210942..74215230,5	K562	blood:
2	chr2:74194837..74202788-chr2:74203103..74212249,15	K562	blood:
3	chr2:74210880..74212548-chr2:74372314..74375193,2	K562	blood:
4	chr2:74210581..74214263-chr2:74424560..74427104,3	K562	blood:
5	chr2:74210903..74212994-chr2:74431667..74434283,2	MCF-7	breast:
6	chr2:74210880..74213761-chr2:74373693..74375989,3	K562	blood:
7	chr2:74187365..74198553-chr2:74205167..74212961,17	MCF-7	breast:
8	chr11:133905199..133907855-chr2:74210970..74213610,2	MCF-7	breast:
9	chr2:74211217..74213609-chr2:74345958..74348496,2	MCF-7	breast:
10	chr2:74052797..74060455-chr2:74207744..74214705,21	MCF-7	breast:
11	chr2:74151695..74161558-chr2:74205273..74215127,19	K562	blood:
12	chr2:74210159..74214364-chr2:74424247..74427320,6	MCF-7	breast:
13	chr2:74209442..74213118-chr2:74372270..74377274,6	MCF-7	breast:
14	chr2:74006477..74008068-chr2:74209603..74212198,2	MCF-7	breast:
15	chr2:74151187..74158039-chr2:74203173..74216266,29	MCF-7	breast:
16	chr11:8709045..8711792-chr2:74211303..74213379,2	MCF-7	breast:
17	chr2:74210080..74211906-chr2:74412687..74415534,2	MCF-7	breast:
18	chr2:74209535..74211828-chr2:97552282..97555129,2	MCF-7	breast:
19	chr2:74152462..74158334-chr2:74210550..74216243,8	K562	blood:
20	chr14:75746098..75746964-chr2:74211481..74212299,2	Hela-S3	cervix:
21	chr2:74210101..74212862-chr2:74733390..74736109,2	K562	blood:
22	chr2:74071679..74074362-chr2:74210863..74213464,2	K562	blood:
23	chr2:74055452..74058450-chr2:74210942..74214913,3	K562	blood:
24	chr2:74209118..74215634-chr2:74424964..74427991,9	MCF-7	breast:
25	chr2:74175475..74176994-chr2:74209729..74212006,2	MCF-7	breast:
26	chr12:122235984..122238947-chr2:74211072..74214040,3	MCF-7	breast:
27	chr2:74209066..74214459-chr2:74345671..74349502,5	K562	blood:
28	chr2:74147649..74157677-chr2:74203379..74217813,34	MCF-7	breast:
29	chr2:74055755..74057848-chr2:74210321..74213795,3	MCF-7	breast:
30	chr2:74210601..74212361-chr2:74374459..74376721,2	MCF-7	breast:
31	chr2:74211059..74212577-chr2:74271171..74274101,2	MCF-7	breast:
32	chr2:74209017..74213063-chr2:74345530..74349441,7	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BOLA3-4	chr2:74211337-74211790	NONHSAT071648

Variant related genes	Relation type
ENSG00000255989	TF binding region
ENSG00000235499	TF binding region
DGUOK-AS1	TF binding region
ENSG00000115289	Chromatin interaction
ENSG00000201876	Chromatin interaction
ENSG00000257800	Chromatin interaction
ENSG00000114956	Chromatin interaction
ENSG00000166441	Chromatin interaction
ENSG00000187605	Chromatin interaction
ENSG00000170345	Chromatin interaction
ENSG00000065911	Chromatin interaction
ENSG00000144048	Chromatin interaction
ENSG00000204241	Chromatin interaction
ENSG00000212694	Chromatin interaction
ENSG00000124356	Chromatin interaction
ENSG00000163170	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000254648	Chromatin interaction
ENSG00000225439	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011177	chr2:74167343-74239905	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3584956	chr2:74197109-74317135	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv3444943	chr2:74210644-74214042	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv3391332	chr2:74211144-74213742	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv3389183	chr2:74211269-74213817	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv3405058	chr2:74211594-74213392	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74210400-74211800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
2	chr2:74210400-74211800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:74210600-74211800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr2:74210600-74211800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
5	chr2:74210600-74211800	Flanking Active TSS	Colonic Mucosa	Colon
6	chr2:74210600-74211800	Active TSS	Fetal Kidney	kidney
7	chr2:74210600-74211800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr2:74210600-74212000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:74210600-74213000	Active TSS	H9 Cell Line	embryonic stem cell
10	chr2:74210800-74211800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr2:74210800-74211800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr2:74210800-74211800	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr2:74210800-74211800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr2:74210800-74211800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr2:74210800-74211800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr2:74210800-74211800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr2:74210800-74211800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
18	chr2:74210800-74211800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr2:74210800-74211800	Flanking Active TSS	HUVEC	blood vessel
20	chr2:74210800-74212000	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr2:74210800-74212800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:74210800-74213000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:74210800-74213000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:74210800-74213000	Active TSS	Colon Smooth Muscle	Colon
25	chr2:74210800-74213000	Active TSS	Gastric	stomach
26	chr2:74210800-74213000	Active TSS	Rectal Smooth Muscle	rectum
27	chr2:74211000-74211800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:74211000-74211800	Flanking Active TSS	Primary B cells from peripheral blood	blood
29	chr2:74211000-74211800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr2:74211000-74211800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr2:74211000-74211800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr2:74211000-74211800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:74211000-74211800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:74211000-74211800	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr2:74211000-74211800	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr2:74211000-74211800	Flanking Active TSS	Dnd41	blood
37	chr2:74211000-74212800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:74211000-74213000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr2:74211000-74213200	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr2:74211200-74211800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr2:74211200-74211800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:74211200-74211800	Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr2:74211200-74211800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr2:74211200-74211800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr2:74211200-74211800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr2:74211200-74211800	Active TSS	Brain Angular Gyrus	brain
47	chr2:74211200-74211800	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr2:74211200-74211800	Flanking Active TSS	Right Ventricle	heart
49	chr2:74211200-74211800	Active TSS	Stomach Mucosa	stomach
50	chr2:74211200-74211800	Flanking Active TSS	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links