Variant report

Variant	rs532723252
Chromosome Location	chr6:114225363-114225364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MARCKS-1	chr6:114225302-114225908	ENSG00000175967.3

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv830779	chr6:114206534-114246099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3471887	chr6:114221959-114226957	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv3471890	chr6:114223284-114226132	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv3471889	chr6:114223520-114225365	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv3471888	chr6:114223659-114225557	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv1822093	chr6:114224070-114225811	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv1820478	chr6:114224070-114226445	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114223200-114225600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:114224600-114226200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:114224800-114226000	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:114224800-114226600	Enhancers	Fetal Stomach	stomach
5	chr6:114225000-114225400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:114225000-114225400	Enhancers	Esophagus	oesophagus
7	chr6:114225000-114225400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
8	chr6:114225000-114225600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:114225000-114225800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:114225000-114225800	Enhancers	Fetal Muscle Trunk	muscle
11	chr6:114225000-114225800	Enhancers	Right Ventricle	heart
12	chr6:114225000-114225800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:114225000-114225800	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr6:114225000-114225800	Enhancers	NH-A	brain
15	chr6:114225000-114226000	Enhancers	Ovary	ovary
16	chr6:114225000-114226000	Enhancers	NHDF-Ad	bronchial
17	chr6:114225000-114226200	Enhancers	Fetal Heart	heart
18	chr6:114225000-114226200	Enhancers	Fetal Muscle Leg	muscle
19	chr6:114225000-114226400	Enhancers	Fetal Lung	lung
20	chr6:114225000-114226600	Enhancers	Placenta	Placenta
21	chr6:114225200-114225400	Active TSS	Colon Smooth Muscle	Colon
22	chr6:114225200-114225400	Enhancers	Right Atrium	heart
23	chr6:114225200-114225400	Flanking Active TSS	HepG2	liver
24	chr6:114225200-114225600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:114225200-114225600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:114225200-114225600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:114225200-114225600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:114225200-114225600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:114225200-114225600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:114225200-114225600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:114225200-114225600	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr6:114225200-114225600	Enhancers	Aorta	Aorta
33	chr6:114225200-114225600	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr6:114225200-114225600	Enhancers	Fetal Kidney	kidney
35	chr6:114225200-114225600	Enhancers	Stomach Mucosa	stomach
36	chr6:114225200-114225600	Enhancers	HSMMtube	muscle
37	chr6:114225200-114225600	Enhancers	Osteobl	bone
38	chr6:114225200-114225800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr6:114225200-114225800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:114225200-114225800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr6:114225200-114225800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:114225200-114225800	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr6:114225200-114225800	Enhancers	Pancreas	Pancrea
44	chr6:114225200-114225800	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr6:114225200-114225800	Enhancers	HUVEC	blood vessel
46	chr6:114225200-114225800	Enhancers	NHLF	lung
47	chr6:114225200-114226000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:114225200-114226000	Enhancers	Lung	lung
49	chr6:114225200-114226600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:114225200-114226800	Active TSS	Left Ventricle	heart

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