Variant report

Variant	rs532812542
Chromosome Location	chr19:40648286-40648287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv911697	chr19:40599603-40711333	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv3336591	chr19:40647161-40670363	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40646200-40648400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr19:40647400-40648600	Enhancers	Adipose Nuclei	Adipose
3	chr19:40647400-40654400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr19:40647800-40648600	Enhancers	Hela-S3	cervix
5	chr19:40647800-40649000	Enhancers	Primary B cells from cord blood	blood
6	chr19:40647800-40649400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr19:40647800-40654000	Enhancers	Primary B cells from peripheral blood	blood
8	chr19:40648000-40648600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:40648000-40652200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr19:40648000-40652400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr19:40648000-40654200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr19:40648200-40648400	Active TSS	GM12878-XiMat	blood
13	chr19:40648200-40648600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:40648200-40649200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:40648200-40649400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr19:40648200-40654600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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