Variant report

Variant	rs532845916
Chromosome Location	chr6:69487600-69487601
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69450619..69452838-chr6:69487007..69488538,2	K562	blood:
2	chr6:69355188..69356834-chr6:69487220..69489411,2	MCF-7	breast:
3	chr6:69449624..69452933-chr6:69485444..69489658,4	K562	blood:
4	chr6:69479313..69482227-chr6:69485193..69487773,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69484600-69487600	Enhancers	Brain Anterior Caudate	brain
2	chr6:69484800-69490000	Enhancers	Fetal Brain Female	brain
3	chr6:69485000-69487600	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:69485000-69490400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:69485600-69487600	Enhancers	Brain Hippocampus Middle	brain
6	chr6:69485600-69487600	Enhancers	Brain Substantia Nigra	brain
7	chr6:69485600-69488400	Weak transcription	K562	blood
8	chr6:69485800-69487600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:69486000-69487600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:69486200-69489600	Enhancers	Fetal Lung	lung
11	chr6:69486400-69487800	Enhancers	Brain Angular Gyrus	brain
12	chr6:69486400-69487800	Weak transcription	Fetal Brain Male	brain
13	chr6:69487200-69487600	Weak transcription	Brain Germinal Matrix	brain
14	chr6:69487200-69487600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:69487600-69488000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:69487600-69488000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
17	chr6:69487600-69488200	Flanking Active TSS	Brain Cingulate Gyrus	brain
18	chr6:69487600-69488200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:69487600-69488400	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr6:69487600-69488800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr6:69487600-69488800	Active TSS	Brain Substantia Nigra	brain
22	chr6:69487600-69489000	Enhancers	Fetal Heart	heart
23	chr6:69487600-69489200	Active TSS	Brain Hippocampus Middle	brain
24	chr6:69487600-69489400	Enhancers	Fetal Stomach	stomach
25	chr6:69487600-69491200	Enhancers	Brain Germinal Matrix	brain

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