Variant report
| Variant | rs532902877 |
|---|---|
| Chromosome Location | chr6:121674251-121674252 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr6:121673935-121674556 | Hela-S3 | cervix: | n/a | chr6:121674510-121674523 |
| 2 | POLR2A | chr6:121674201-121674312 | MCF10A-Er-Src | breast: | n/a | n/a |
| 3 | EP300 | chr6:121674170-121674417 | Hela-S3 | cervix: | n/a | chr6:121674311-121674321 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNU6-1286P | TF binding region |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023384 | chr6:121235867-121683448 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv530527 | chr6:121298528-121789855 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv830789 | chr6:121581450-121732320 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv970057 | chr6:121663325-121679145 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv519021 | chr6:121671944-121677165 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3451296 | chr6:121673933-121674300 | Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
