Variant report

Variant	rs532911880
Chromosome Location	chr15:77846479-77846480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77833246..77835948-chr15:77846373..77848114,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv570140	chr15:77787469-77851535	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77836200-77846600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:77838600-77849800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:77838800-77849000	Weak transcription	Gastric	stomach
4	chr15:77840600-77848600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:77841400-77846600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:77841600-77846800	Weak transcription	Spleen	Spleen
7	chr15:77841600-77847000	Weak transcription	Fetal Brain Female	brain
8	chr15:77841600-77849600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:77842200-77850200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr15:77842800-77850400	Enhancers	Brain Hippocampus Middle	brain
11	chr15:77843800-77847400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:77844000-77846600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:77844400-77846600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr15:77844400-77848400	Weak transcription	Fetal Intestine Small	intestine
15	chr15:77844400-77850200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:77844600-77850000	Enhancers	Brain Anterior Caudate	brain
17	chr15:77844800-77848200	Enhancers	Brain Angular Gyrus	brain
18	chr15:77844800-77849800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:77844800-77849800	Enhancers	Brain Substantia Nigra	brain
20	chr15:77845000-77849400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr15:77845400-77846600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:77845600-77847200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:77846000-77846600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:77846000-77847800	Enhancers	Fetal Muscle Leg	muscle
25	chr15:77846000-77848800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr15:77846200-77846600	Weak transcription	Fetal Brain Male	brain
27	chr15:77846200-77846600	Flanking Active TSS	HepG2	liver
28	chr15:77846200-77847000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:77846200-77848000	Bivalent Enhancer	Placenta	Placenta
30	chr15:77846200-77850200	Enhancers	Brain Cingulate Gyrus	brain
31	chr15:77846400-77846800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:77846400-77846800	Enhancers	Brain Germinal Matrix	brain
33	chr15:77846400-77847000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:77846400-77847200	Enhancers	Fetal Heart	heart
35	chr15:77846400-77847400	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links