Variant report

Variant	rs532925730
Chromosome Location	chr6:161412119-161412120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:61)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:61 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:161412117-161414075	K562	blood:	n/a	n/a
2	STAT3	chr6:161411772-161412194	MCF10A-Er-Src	breast:	n/a	chr6:161412092-161412099
3	MYC	chr6:161411801-161414241	K562	blood:	n/a	chr6:161412941-161412950
4	POLR2A	chr6:161412119-161413702	U87	brain:	n/a	n/a
5	MTA3	chr6:161412116-161413063	GM12878	blood:	n/a	n/a
6	REST	chr6:161412064-161413919	H1-neurons	neurons:	n/a	chr6:161412576-161412589
7	KAP1	chr6:161411200-161412225	K562	blood:	n/a	n/a
8	POLR2A	chr6:161411570-161414072	MCF10A-Er-Src	breast:	n/a	n/a
9	ZNF384	chr6:161412094-161412257	GM12878	blood:	n/a	n/a
10	MAZ	chr6:161411982-161414175	K562	blood:	n/a	chr6:161412941-161412950
11	TEAD4	chr6:161411797-161414215	K562	blood:	n/a	n/a
12	BHLHE40	chr6:161411973-161414136	K562	blood:	n/a	chr6:161412693-161412709
13	SMC3	chr6:161412100-161414356	SK-N-SH	brain:	n/a	n/a
14	NR2F2	chr6:161411948-161412874	K562	blood:	n/a	n/a
15	UBTF	chr6:161411943-161414218	K562	blood:	n/a	n/a
16	POLR2A	chr6:161412101-161413783	K562	blood:	n/a	n/a
17	RCOR1	chr6:161412101-161414207	K562	blood:	n/a	n/a
18	IRF1	chr6:161411201-161414520	K562	blood:	n/a	chr6:161412699-161412713 chr6:161412677-161412691 chr6:161413152-161413166
19	MXI1	chr6:161412018-161414185	GM12878	blood:	n/a	n/a
20	POLR2A	chr6:161412096-161413867	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr6:161411923-161413704	GM18951	blood:	n/a	n/a
22	MXI1	chr6:161411762-161414420	SK-N-SH	brain:	n/a	n/a
23	TEAD4	chr6:161411999-161414254	K562	blood:	n/a	n/a
24	POLR2A	chr6:161412037-161414104	GM12891	blood:	n/a	n/a
25	POLR2A	chr6:161412042-161413735	PFSK-1	brain:	n/a	n/a
26	ZNF384	chr6:161411895-161412975	K562	blood:	n/a	n/a
27	POLR2A	chr6:161410637-161414109	IMR90	lung:	n/a	n/a
28	JUN	chr6:161412103-161412340	H1-hESC	embryonic stem cell:	n/a	n/a
29	TEAD4	chr6:161412070-161413041	ECC-1	luminal epithelium:	n/a	n/a
30	REST	chr6:161412051-161413173	K562	blood:	n/a	chr6:161412576-161412589
31	ELK1	chr6:161411834-161412997	K562	blood:	n/a	n/a
32	TBP	chr6:161412092-161414186	K562	blood:	n/a	n/a
33	EP300	chr6:161411715-161412972	K562	blood:	n/a	n/a
34	CHD1	chr6:161411694-161414825	IMR90	lung:	n/a	chr6:161412623-161412633 chr6:161412679-161412689
35	POLR2A	chr6:161412113-161413628	K562	blood:	n/a	n/a
36	RCOR1	chr6:161412068-161414188	K562	blood:	n/a	n/a
37	EP300	chr6:161411849-161412613	GM12878	blood:	n/a	n/a
38	PML	chr6:161411990-161414185	K562	blood:	n/a	n/a
39	POLR2A	chr6:161412098-161414135	K562	blood:	n/a	n/a
40	GATA1	chr6:161411978-161413003	PBDE	blood:	n/a	n/a
41	POLR2A	chr6:161412089-161413706	K562	blood:	n/a	n/a
42	GATA2	chr6:161412050-161412567	SH-SY5Y	brain:	n/a	n/a
43	CBX3	chr6:161412044-161414226	K562	blood:	n/a	n/a
44	POLR2A	chr6:161412117-161413754	K562	blood:	n/a	n/a
45	HCFC1	chr6:161412040-161414218	Hela-S3	cervix:	n/a	n/a
46	CCNT2	chr6:161412039-161413458	K562	blood:	n/a	chr6:161412681-161412690
47	GATA3	chr6:161412099-161412683	T-47D	breast:	n/a	n/a
48	POLR2A	chr6:161412119-161413608	U87	brain:	n/a	n/a
49	IRF1	chr6:161412113-161412850	K562	blood:	n/a	chr6:161412699-161412713 chr6:161412677-161412691
50	MXI1	chr6:161411783-161414238	IMR90	lung:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:158243442..158245618-chr6:161412032..161413556,2	K562	blood:
2	chr6:161411531..161413327-chr6:161653025..161655728,2	K562	blood:
3	chr6:161409929..161412719-chr6:161465318..161467396,2	K562	blood:
4	chr6:161411809..161413437-chr6:161693885..161696604,2	K562	blood:
5	chr6:161411372..161413087-chr6:161442452..161444110,2	K562	blood:
6	chr6:161349966..161354183-chr6:161410810..161413824,4	MCF-7	breast:
7	chr6:161300742..161302528-chr6:161411919..161413550,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AGPAT4-1	chr6:161411382-161412758	NONHSAT115928
2	lnc-AGPAT4-1	chr6:161411350-161413374	ENSG00000272841.1

No data

Variant related genes	Relation type
MAP3K4	TF binding region
ENSG00000130340	Chromatin interaction
ENSG00000231863	Chromatin interaction
ENSG00000026652	Chromatin interaction
ENSG00000224371	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv3357609	chr6:161411812-161414260	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3427182	chr6:161411987-161414535	Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161411200-161414000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:161411200-161414600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:161411600-161412200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:161411600-161412400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:161411600-161412600	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr6:161411600-161414000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:161411600-161414200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:161411600-161414400	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr6:161411800-161412200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:161411800-161412200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:161411800-161412200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr6:161411800-161412200	Flanking Active TSS	Fetal Brain Female	brain
13	chr6:161411800-161412200	Flanking Active TSS	Fetal Intestine Small	intestine
14	chr6:161411800-161412200	Flanking Active TSS	A549	lung
15	chr6:161411800-161412200	Flanking Active TSS	HUVEC	blood vessel
16	chr6:161411800-161412400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:161411800-161412400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:161411800-161412600	Active TSS	Fetal Brain Male	brain
19	chr6:161411800-161413400	Active TSS	Fetal Lung	lung
20	chr6:161411800-161414000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:161411800-161414000	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:161411800-161414000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:161411800-161414000	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr6:161411800-161414000	Active TSS	Brain Cingulate Gyrus	brain
25	chr6:161411800-161414000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr6:161411800-161414000	Active TSS	Brain Substantia Nigra	brain
27	chr6:161411800-161414000	Active TSS	Fetal Intestine Large	intestine
28	chr6:161411800-161414000	Active TSS	Fetal Muscle Leg	muscle
29	chr6:161411800-161414000	Active TSS	K562	blood
30	chr6:161411800-161414000	Active TSS	NHLF	lung
31	chr6:161411800-161414200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:161411800-161414200	Active TSS	Brain Angular Gyrus	brain
33	chr6:161411800-161414200	Active TSS	Fetal Kidney	kidney
34	chr6:161411800-161414200	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr6:161411800-161414200	Active TSS	Rectal Smooth Muscle	rectum
36	chr6:161411800-161414200	Active TSS	HSMMtube	muscle
37	chr6:161411800-161414400	Active TSS	H1 Cell Line	embryonic stem cell
38	chr6:161411800-161414400	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr6:161411800-161414400	Active TSS	HMEC	breast
40	chr6:161411800-161414400	Active TSS	NH-A	brain
41	chr6:161411800-161417800	Active TSS	GM12878-XiMat	blood
42	chr6:161412000-161412200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
43	chr6:161412000-161412200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr6:161412000-161412200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr6:161412000-161412200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr6:161412000-161412200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr6:161412000-161412200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:161412000-161412200	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr6:161412000-161412200	Flanking Active TSS	Brain Germinal Matrix	brain
50	chr6:161412000-161412200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland

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