Variant report

Variant	rs532962027
Chromosome Location	chr15:75289687-75289688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75289096..75291038-chr15:75311135..75313518,2	K562	blood:
2	chr15:75249528..75251223-chr15:75287946..75289828,2	K562	blood:
3	chr15:75286200..75292858-chr15:75303462..75309796,11	MCF-7	breast:
4	chr15:75289676..75292332-chr15:75492915..75494669,2	MCF-7	breast:
5	chr15:75274950..75276613-chr15:75287594..75290045,3	K562	blood:
6	chr15:75287456..75290010-chr15:75314463..75316098,2	K562	blood:
7	chr15:75275080..75277543-chr15:75287594..75290421,2	K562	blood:

Variant related genes	Relation type
ENSG00000260483	Chromatin interaction
ENSG00000198794	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000167173	Chromatin interaction
ENSG00000199580	Chromatin interaction
ENSG00000138621	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3364772	chr15:75289575-75289985	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75287200-75289800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:75287400-75290000	Bivalent Enhancer	Stomach Mucosa	stomach
3	chr15:75288200-75290000	Enhancers	Lung	lung
4	chr15:75288200-75290200	Enhancers	Spleen	Spleen
5	chr15:75288400-75289800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr15:75288400-75289800	Flanking Active TSS	Pancreas	Pancrea
7	chr15:75288600-75289800	Flanking Active TSS	Brain Germinal Matrix	brain
8	chr15:75288600-75290000	Bivalent Enhancer	HUVEC	blood vessel
9	chr15:75288800-75289800	Enhancers	Right Ventricle	heart
10	chr15:75288800-75290000	Flanking Active TSS	Fetal Brain Female	brain
11	chr15:75288800-75290000	Enhancers	Gastric	stomach
12	chr15:75288800-75290000	Weak transcription	Left Ventricle	heart
13	chr15:75289000-75290000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr15:75289000-75291000	Weak transcription	Fetal Intestine Large	intestine
15	chr15:75289000-75315800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:75289200-75289800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr15:75289200-75289800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr15:75289200-75290000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:75289200-75290000	Enhancers	HepG2	liver
20	chr15:75289200-75290200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:75289200-75290400	Enhancers	Brain Anterior Caudate	brain
22	chr15:75289400-75289800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:75289400-75289800	Active TSS	Brain Angular Gyrus	brain
24	chr15:75289400-75289800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:75289400-75289800	Transcr. at gene 5' and 3'	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:75289400-75289800	Enhancers	Fetal Lung	lung
27	chr15:75289400-75289800	Enhancers	Right Atrium	heart
28	chr15:75289400-75289800	Weak transcription	Small Intestine	intestine
29	chr15:75289400-75290000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:75289400-75290200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:75289400-75291000	Weak transcription	Fetal Intestine Small	intestine
32	chr15:75289400-75291400	Enhancers	Fetal Brain Male	brain
33	chr15:75289400-75299600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr15:75289400-75305000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:75289400-75305000	Weak transcription	Brain Substantia Nigra	brain
36	chr15:75289400-75305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:75289400-75315400	Weak transcription	Fetal Kidney	kidney
38	chr15:75289600-75289800	Enhancers	Primary hematopoietic stem cells	blood
39	chr15:75289600-75289800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:75289600-75289800	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr15:75289600-75289800	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr15:75289600-75289800	Flanking Active TSS	Duodenum Mucosa	Duodenum
43	chr15:75289600-75289800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
44	chr15:75289600-75289800	Enhancers	Esophagus	oesophagus
45	chr15:75289600-75289800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
46	chr15:75289600-75290000	Enhancers	H1 Cell Line	embryonic stem cell
47	chr15:75289600-75290000	Bivalent Enhancer	Fetal Muscle Leg	muscle
48	chr15:75289600-75290000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
49	chr15:75289600-75292200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr15:75289600-75304000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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