Variant report

Variant	rs533065633
Chromosome Location	chr16:30378028-30378029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr16:30377863-30378087	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30376477..30383094-chr16:30415979..30420163,8	MCF-7	breast:
2	chr16:30346170..30348596-chr16:30376800..30378752,2	MCF-7	breast:
3	chr16:30368801..30385970-chr16:30403825..30413311,30	MCF-7	breast:
4	chr16:30376934..30383374-chr16:30417165..30421108,8	K562	blood:
5	chr16:30376626..30379434-chr16:30417426..30420453,4	MCF-7	breast:

No data

Variant related genes	Relation type
MYLPF	TF binding region
TBC1D10B	TF binding region
ENSG00000183604	Chromatin interaction
ENSG00000180096	Chromatin interaction
ENSG00000179965	Chromatin interaction
ENSG00000180035	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065915	chr16:29967090-30486120	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	229 gene(s)	inside rSNPs	diseases
2	nsv542897	chr16:29967090-30486120	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	229 gene(s)	inside rSNPs	diseases
3	esv2758420	chr16:30073955-30383280	Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	esv2758642	chr16:30073955-30383280	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv1056897	chr16:30363683-30457504	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
6	nsv905724	chr16:30368591-30438930	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
7	nsv532531	chr16:30370550-30581820	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
8	nsv827612	chr16:30371538-30429862	Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
9	esv1794891	chr16:30376269-30382642	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
10	esv1795117	chr16:30376269-30382642	Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
11	esv1803705	chr16:30376269-30382642	Genic enhancers Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
12	esv1791873	chr16:30376959-30382642	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
13	esv1801199	chr16:30376959-30382642	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
14	nsv905725	chr16:30376959-30420851	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30367600-30378600	Weak transcription	Fetal Kidney	kidney
2	chr16:30367600-30378600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:30367600-30378800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr16:30368000-30378600	Strong transcription	Fetal Stomach	stomach
5	chr16:30368200-30378200	Strong transcription	Lung	lung
6	chr16:30368200-30378600	Strong transcription	Fetal Intestine Small	intestine
7	chr16:30368200-30379000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:30368400-30378200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr16:30368400-30378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:30368400-30378800	Weak transcription	HSMMtube	muscle
11	chr16:30368600-30378400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr16:30368800-30378600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr16:30369000-30378200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr16:30369000-30378200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr16:30369200-30378400	Strong transcription	Fetal Intestine Large	intestine
16	chr16:30369400-30380000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr16:30370600-30378800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr16:30370800-30379000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr16:30371000-30379200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr16:30371600-30378800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr16:30371800-30378800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr16:30372000-30379200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr16:30374000-30378200	Strong transcription	HUVEC	blood vessel
24	chr16:30374000-30378800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:30374800-30379600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr16:30375200-30378600	Weak transcription	NH-A	brain
27	chr16:30375800-30379000	Enhancers	Fetal Heart	heart
28	chr16:30376200-30378600	Enhancers	Fetal Brain Male	brain
29	chr16:30376400-30378400	Genic enhancers	Stomach Smooth Muscle	stomach
30	chr16:30376400-30379000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr16:30376600-30378600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr16:30376600-30378600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
33	chr16:30376600-30378600	Genic enhancers	Brain Hippocampus Middle	brain
34	chr16:30376600-30378800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr16:30376800-30378200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr16:30376800-30378800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr16:30376800-30378800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr16:30377000-30378200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
39	chr16:30377000-30378200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr16:30377000-30378200	Weak transcription	Aorta	Aorta
41	chr16:30377000-30378200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr16:30377000-30378200	Weak transcription	Ovary	ovary
43	chr16:30377000-30378200	Weak transcription	Pancreas	Pancrea
44	chr16:30377000-30378200	Weak transcription	Right Atrium	heart
45	chr16:30377000-30378600	Weak transcription	Brain Substantia Nigra	brain
46	chr16:30377000-30378600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr16:30377000-30378800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr16:30377000-30378800	Weak transcription	Esophagus	oesophagus
49	chr16:30377000-30379000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr16:30377200-30378200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links