Variant report

Variant	rs533139704
Chromosome Location	chr11:65809538-65809539
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65802624..65805080-chr11:65807648..65810087,2	K562	blood:
2	chr11:65806835..65809715-chr11:65810972..65814336,3	MCF-7	breast:
3	chr11:65657373..65660327-chr11:65806833..65809672,2	K562	blood:

Variant related genes	Relation type
ENSG00000175602	Chromatin interaction
ENSG00000175229	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
3	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
5	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv897770	chr11:65803750-65824472	Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	esv3402312	chr11:65808901-65811949	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65783400-65811200	Weak transcription	Aorta	Aorta
2	chr11:65790400-65812600	Weak transcription	Right Atrium	heart
3	chr11:65790400-65818600	Weak transcription	HSMM	muscle
4	chr11:65803800-65812400	Weak transcription	Pancreas	Pancrea
5	chr11:65805000-65810000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:65805000-65815800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:65806000-65810000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:65806800-65811800	Strong transcription	Fetal Brain Female	brain
9	chr11:65807400-65812400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:65808200-65812400	Weak transcription	Adipose Nuclei	Adipose
11	chr11:65808400-65809600	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:65808400-65809600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:65808400-65810000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:65808400-65811600	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:65808400-65811800	Strong transcription	Brain Germinal Matrix	brain
16	chr11:65808400-65812000	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:65808600-65812400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:65808800-65809800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:65808800-65810000	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr11:65808800-65811400	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:65808800-65812400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:65809000-65809800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:65809000-65811000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:65809000-65812200	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr11:65809000-65812400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:65809200-65810600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:65809400-65811000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:65809400-65811000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:65809400-65812400	Weak transcription	Brain Anterior Caudate	brain

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